View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_28 (Length: 378)
Name: NF17215_low_28
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 2287946 - 2288296
Alignment:
| Q |
7 |
gtgagatgaaagtctattgaaatctccatcatccattgaaaaggagagagaagagagtttagaaaaaagtgaattttaatggtagagatcatgaattatg |
106 |
Q |
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| T |
2287946 |
gtgacatgaaagtctattgaaatctccatcatccattgaaaaggagagagaagatagtttagaaaaaagtgaattttaatggtatagatcatgaatcatg |
2288045 |
T |
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| Q |
107 |
agtcatgaagggaaaaagttgagagaattcattattcctattagatgatttacacttgccaaaaatcaatcgtcattaggagttacactcatcatcttca |
206 |
Q |
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| T |
2288046 |
agtcatgaagggaaaaagttgagagaattcattattcctattagatgatttacacttgccaaaaatcaatcgtcattaggagttacac---tcatcttca |
2288142 |
T |
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| Q |
207 |
aagtaaacaaaaaagatatcagatttaaagcagtcattttttcctacattcatgtgatcaagacattacggtccagaagaaaaatacttaatttttactt |
306 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2288143 |
aagtaaataaaaaagatatcagatttaaagtagtcattttttcctacattcacgtgatcaagacattacggtccagaagaaaaatacttaatttttactt |
2288242 |
T |
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| Q |
307 |
cataatccctaaaataccgagtttaaattaggatcgtctgatcttgatcaaaca |
360 |
Q |
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| T |
2288243 |
cataatccctaaaataccgagtttaaattaggatcgtccgatcttgatcaaaca |
2288296 |
T |
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