View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_29 (Length: 368)
Name: NF17215_low_29
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 176 - 357
Target Start/End: Complemental strand, 376125 - 375944
Alignment:
| Q |
176 |
ccataaaagggtactggtgcttgattagttggctgctttagagggcaagtggaaataggaagcacagggagattttggcaattgcacatttcaatcatat |
275 |
Q |
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| T |
376125 |
ccataaaagggtactggtgcttgattagttggctgctttagagggcaagtggaaataggaagcacagggagattttggcaattgcacatttcaatcatat |
376026 |
T |
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| Q |
276 |
atccatctggatcatgaaagaacaattgatcaacctgaattccaccatcctccacaactgctgttttatactcgatattcat |
357 |
Q |
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| T |
376025 |
atccatctggatcatgaaagaacaattgatcaaccttaattccaccatcctccacaactgctgttttatactcaatattcat |
375944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 376288 - 376153
Alignment:
| Q |
17 |
cagttctttccttctcctgcaaaaacatgtccaatttggatataaattaagcttttcaatttcattgtagtaatcattggattaaatttaaacgaaacaa |
116 |
Q |
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| T |
376288 |
cagttctttccttctcctgcaaaaacatgtccaatttggatataaattaagcttttcaatttcattgtagtaatcattggattaaatttaaacgaaaca- |
376190 |
T |
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| Q |
117 |
attaaagaaattaattaattaggagagttgagaagaaaac |
156 |
Q |
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| T |
376189 |
---aaagaaattaattaattaggagagttgagaagaaaac |
376153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 44544811 - 44544876
Alignment:
| Q |
254 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
319 |
Q |
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| T |
44544811 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44544876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 44555453 - 44555518
Alignment:
| Q |
254 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
319 |
Q |
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| T |
44555453 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44555518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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