View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17215_low_3 (Length: 748)

Name: NF17215_low_3
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17215_low_3
NF17215_low_3
[»] chr3 (1 HSPs)
chr3 (1-738)||(32251900-32252637)
[»] chr7 (5 HSPs)
chr7 (347-732)||(8846350-8846735)
chr7 (591-711)||(8821031-8821151)
chr7 (43-97)||(8846289-8846343)
chr7 (73-114)||(8820226-8820267)
chr7 (77-114)||(8821497-8821534)
[»] chr4 (2 HSPs)
chr4 (551-711)||(11416420-11416580)
chr4 (516-732)||(11416655-11416865)
[»] chr1 (2 HSPs)
chr1 (624-702)||(36373283-36373361)
chr1 (401-442)||(36384547-36384588)


Alignment Details
Target: chr3 (Bit Score: 706; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 1 - 738
Target Start/End: Original strand, 32251900 - 32252637
Alignment:
Q  1 aaaatccatatcatccacaacatgaagtctcttcctcttaatcttctctttgaagaaactattataatctctcaaagtaacattaccatcaacttcttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32251900 aaaatccatatcatccacaacatgaagtctcttcctcttaatcttctccttgaagaaactattataatctctcaaagtaacattaccatcaacttcttca 32251999  T
Q  101 tcacttgatattgttataggctcattgccatactccaaattcaacacatcagcaccattcttctttgcactagaaatataattagtcaaataatgatatt 200  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32252000 tcacttgatattgttgtaggctcatttccgtactccaaattcaacacatcagcaccattcttctttgcactagaaatataattagtcaaataatgatatt 32252099  T
Q  201 tggaagaaatgtcatcagttttatgtaccttaaacttgccatcaccatcatcatttttgttccttgtgttcacattaatagctttgcaatgattcacctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32252100 tggaagaaatgtcatcagttttatgtaccttaaacttgccatcaccatcatcatttttgttccttgtgttcacattaatagctttgcaatgattcacctt 32252199  T
Q  301 attaaccttttgaccactcttaccaccatcctcttctgaatctgaagaagagttttcatcttctatcatataagttgttctcttgtagggacacgttcga 400  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32252200 attaaccttttgatcactcttaccaccatcctcttctgaatctgaagaagagttttcatcttctatcatataagttgttctcttgtagggacacgttcga 32252299  T
Q  401 aaattaccaacttccaacttctcaacaacacaacctacgtaacgttcaggctgtacattcctacgtttcgaacgtcgcaagccttcaacttcatttgatg 500  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32252300 aaattacccacttccaacttctcaacaacacaacctacgtaacgctcaggctgtacattcctacgtttcgaacgtcgcaagccttcaacttcatttgatg 32252399  T
Q  501 gatttggtggcgcttcatcttcttctccatcataatcataaaatacatcaaattgagaaacaataggtactagtgattccttttttaagctgaagttcac 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32252400 gatttggtggcgcttcatcttcttctccatcataatcataaaatacatcaaattgagaaacaataggtactagtgattccttttttaagctgaagttcac 32252499  T
Q  601 aacatttataagccaaggactaataatatcagtatcatttcccataacttgatacacaatcttgttttgcacagatcttatatggaatgaaaccttcttt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32252500 aacatttataagccaaggactaataatatcagtatcatttcccataacttgatacacaatcttgttttgcacagatcttatatggaatgaaaccttcttt 32252599  T
Q  701 aaaaaagatgtaattacaaaccacgaaagatctgatga 738  Q
    |||||||||||||||||||||||||||||||| |||||    
T  32252600 aaaaaagatgtaattacaaaccacgaaagatcagatga 32252637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 347 - 732
Target Start/End: Original strand, 8846350 - 8846735
Alignment:
Q  347 gaagagttttcatcttctatcatataagttgttctcttgtagggacacgttcgaaaattaccaacttccaacttctcaacaacacaacctacgtaacgtt 446  Q
    ||||| |||||||| ||||||| ||||  |  | ||||||| || | | |||||||| |||||||||||||||||||||||  | |||||| ||||||||    
T  8846350 gaagaattttcatcctctatcaaataacatcctatcttgtatggcctcattcgaaaagtaccaacttccaacttctcaacagaagaacctatgtaacgtt 8846449  T
Q  447 caggctgtacattcctacgtttcgaacgtcgcaagccttcaacttcatttgatggatttggtggcgcttcatcttcttctccatcataatcataaaatac 546  Q
      || || |||||||||||||| |||||||| | |||||||| || ||||||| |  ||||  ||||||||||||||||||| ||||||||| |||| |     
T  8846450 tgggttggacattcctacgttttgaacgtcgtaggccttcaatttgatttgatagcattggcagcgcttcatcttcttctccgtcataatcacaaaacat 8846549  T
Q  547 atcaaattgagaaacaataggtactagtgattccttttttaagctgaagttcacaacatttataagccaaggactaataatatcagtatcatttcccata 646  Q
    ||| ||| ||||||| | |||||||| |||| ||||||   |  |||||||||||||||||| |||  | ||| |||||||||||| ||| |||||||||    
T  8846550 atcgaatagagaaaccacaggtactattgatcccttttccgatttgaagttcacaacatttagaagagatggattaataatatcagcatcgtttcccata 8846649  T
Q  647 acttgatacacaatcttgttttgcacagatcttatatggaatgaaaccttctttaaaaaagatgtaattacaaaccacgaaagatc 732  Q
    || ||||| | |||||||||||| |||||||| |||  ||||||||||||||||||||| |||||  | || ||||||||||||||    
T  8846650 acatgataaaaaatcttgttttgaacagatctgatactgaatgaaaccttctttaaaaaggatgttgtaacgaaccacgaaagatc 8846735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 591 - 711
Target Start/End: Complemental strand, 8821151 - 8821031
Alignment:
Q  591 tgaagttcacaacatttataagccaaggactaataatatcagtatcatttcccataacttgatacacaatcttgttttgcacagatcttatatggaatga 690  Q
    |||||||||||| |||||||||  ||||| |||||||||||||||| ||| ||||||| |||||||||||||| ||||| |||||||| |||  ||||||    
T  8821151 tgaagttcacaatatttataagagaaggattaataatatcagtatcgttttccataacatgatacacaatcttattttgaacagatctaatactgaatga 8821052  T
Q  691 aaccttctttaaaaaagatgt 711  Q
    ||||||||| |||| ||||||    
T  8821051 aaccttcttcaaaagagatgt 8821031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 8846289 - 8846343
Alignment:
Q  43 cttctctttgaagaaactattataatctctcaaagtaacattaccatcaacttct 97  Q
    |||||||||| ||||||||| ||||| || ||||||||||||| |||||||||||    
T  8846289 cttctctttgcagaaactataataatgtcccaaagtaacattatcatcaacttct 8846343  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 8820226 - 8820267
Alignment:
Q  73 caaagtaacattaccatcaacttcttcatcacttgatattgt 114  Q
    |||| |||||||| ||||||||||| ||||||||||||||||    
T  8820226 caaaataacattatcatcaacttctacatcacttgatattgt 8820267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 8821534 - 8821497
Alignment:
Q  77 gtaacattaccatcaacttcttcatcacttgatattgt 114  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  8821534 gtaacattatcatcaacttctacatcacttgatattgt 8821497  T

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Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 551 - 711
Target Start/End: Complemental strand, 11416580 - 11416420
Alignment:
Q  551 aattgagaaacaataggtactagtgattccttttttaagctgaagttcacaacatttataagccaaggactaataatatcagtatcatttcccataactt 650  Q
    ||||| |||||||||| |||||||||| | |||||| |  ||||||||| |||||| || ||  |||||||| ||||||||||||||||| |||||||||    
T  11416580 aattgtgaaacaatagatactagtgatccgtttttttatttgaagttcaaaacattcatgagagaaggactactaatatcagtatcatttaccataactt 11416481  T
Q  651 gatacacaatcttgttttgcacagatcttatatggaatgaaaccttctttaaaaaagatgt 711  Q
    ||||||||| |||||| |||||| ||| ||||  ||| |||||||||||||||||||||||    
T  11416480 gatacacaaccttgttgtgcacaaatcatataatgaacgaaaccttctttaaaaaagatgt 11416420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 516 - 732
Target Start/End: Original strand, 11416655 - 11416865
Alignment:
Q  516 catcttcttctccatcataatcataaaatacatcaaattgagaaacaataggtactagtgattccttttttaagctgaagttcacaacatttataagcca 615  Q
    |||||||||||||||||||||||| |      ||||||||||||| || |||||  |||||| | |||||| |  | | ||||| |||||| ||||| ||    
T  11416655 catcttcttctccatcataatcatga------tcaaattgagaaaaaacaggtagcagtgatccattttttgattttatgttcaaaacattcataagaca 11416748  T
Q  616 aggactaataatatcagtatcatttcccataacttgatacacaatcttgttttgcacagatcttatatggaatgaaaccttctttaaaaaagatgtaatt 715  Q
    |||| || |||||||| ||| |||||||||||  ||||||| || |||||| |||||| ||||||||  ||| |||| ||||| ||||||| ||||  |     
T  11416749 aggattactaatatcaatattatttcccataaggtgatacataaccttgttgtgcacaaatcttataatgaaagaaatcttctataaaaaatatgtcgta 11416848  T
Q  716 acaaaccacgaaagatc 732  Q
    | |||||| ||||||||    
T  11416849 agaaaccaagaaagatc 11416865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 702
Target Start/End: Complemental strand, 36373361 - 36373283
Alignment:
Q  624 taatatcagtatcatttcccataacttgatacacaatcttgttttgcacagatcttatatggaatgaaaccttctttaa 702  Q
    |||||| || |||||| |||||||||| |||||||||||||||||| || ||||||||     ||||||||||||||||    
T  36373361 taatattaggatcattgcccataacttcatacacaatcttgttttgaaccgatcttatgacatatgaaaccttctttaa 36373283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 36384588 - 36384547
Alignment:
Q  401 aaattaccaacttccaacttctcaacaacacaacctacgtaa 442  Q
    ||||||||||||||||||||||| |||  |||||||||||||    
T  36384588 aaattaccaacttccaacttctcgacactacaacctacgtaa 36384547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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