View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_30 (Length: 368)
Name: NF17215_low_30
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 28152834 - 28152519
Alignment:
| Q |
16 |
atgaattttagagtaactaattcataaaatgctagttagagaatttttgacttgcgacaaagcatgtgatctttgaaagagccaatttaagctagaaagc |
115 |
Q |
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| T |
28152834 |
atgaattttaaagtaactaattcataaaatgctagttagagagtttttgacttgcgacaaagcatgtgatctttgatagagccaatttaa---------- |
28152745 |
T |
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| Q |
116 |
aacaaacgttttggcaaaaaataaaagagagagcaacaatatataacattatgaaacgtggcagcaaatgaaaagcttatgtaaatatctcatgtgatgt |
215 |
Q |
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| T |
28152744 |
------cgttttggcaaaatataaaagagagagcaacaata----acattatgaaacgtggcagcaaatgaaaagcttatgtaaatatttcatgtgatgt |
28152655 |
T |
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| Q |
216 |
gtgttataaaaatctggtctttggggtggcaagagcccctaaatcactctatatgaagattggnnnnnnnnnggtagtatatgctgaacacacaaccaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28152654 |
gtgttataaaaatctggtctttggggtggcaagagcccctaaatca--ctatatgaagattgg--aaaaaaaggtagtatatgctgaacacacaaccaac |
28152559 |
T |
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| Q |
316 |
ataaatttggatgttgataaatgtcaaaattacttatttt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
28152558 |
ataaatttggatgttgataaatgtcaaaattacttatttt |
28152519 |
T |
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