View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_31 (Length: 360)
Name: NF17215_low_31
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 32347086 - 32346749
Alignment:
| Q |
7 |
aaaatttgtttcataatctcttatgattgtgaatagattctacatatttatattcacaacccatttttctctttttcatatgtgcatatgtatcataaac |
106 |
Q |
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| T |
32347086 |
aaaatttgtttcataatctcttatgattgcgaatagattctacatatttatattcacaaccaatttttctctttttcatatgtgcatatgtatcataaac |
32346987 |
T |
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| Q |
107 |
cgagtgtcataagatactctacaaacacctacacgtacatatgtatttttgtcgagagtaataaattcaaatttttgatttaaggatcaacatatcatac |
206 |
Q |
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| T |
32346986 |
cgagtgtcataagatactctacaaacatttacatgtacatatgtatttttgtcgagagtaataaattcaaatttttgatttaaggatcaacatatcatac |
32346887 |
T |
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| Q |
207 |
cattgttctacacacaataaccccataaagaataattaagaagagtaccatcaaagaataagatctttgattagaggattatttagtgaatttttaaaat |
306 |
Q |
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| T |
32346886 |
cattgttctacacacaataaccccataaagaataattaagaagagtaccatcaaagaataagatctttgattagaggattatttagtgaatttttaaaat |
32346787 |
T |
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| Q |
307 |
gatgatttacccaatactatctttgaaggtattgaaat |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32346786 |
gatgatttacccaatactatctttgaaggtattgaaat |
32346749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 32361521 - 32361466
Alignment:
| Q |
7 |
aaaatttgtttcataatctcttatgattgtgaatagattctacatatttatattca |
62 |
Q |
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|||||| ||||| ||||||||||||| |||||||||||||||| |||| |||||| |
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| T |
32361521 |
aaaattggtttcctaatctcttatgagtgtgaatagattctactgatttgtattca |
32361466 |
T |
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