View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17215_low_33 (Length: 337)

Name: NF17215_low_33
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17215_low_33
NF17215_low_33
[»] chr8 (25 HSPs)
chr8 (24-322)||(780238-780537)
chr8 (130-322)||(774556-774748)
chr8 (130-322)||(6786489-6786680)
chr8 (24-129)||(774778-774883)
chr8 (24-124)||(18068492-18068592)
chr8 (24-124)||(22432393-22432493)
chr8 (24-124)||(27576680-27576780)
chr8 (24-124)||(29182677-29182777)
chr8 (130-215)||(22432274-22432358)
chr8 (130-215)||(29182558-29182642)
chr8 (30-120)||(43916026-43916118)
chr8 (30-108)||(22014767-22014845)
chr8 (130-215)||(27576815-27576905)
chr8 (130-198)||(1668157-1668224)
chr8 (130-198)||(16658872-16658939)
chr8 (130-198)||(38521226-38521293)
chr8 (26-68)||(6786367-6786409)
chr8 (30-68)||(1668039-1668077)
chr8 (30-68)||(16658754-16658792)
chr8 (132-198)||(22014889-22014954)
chr8 (130-196)||(11472357-11472426)
chr8 (30-68)||(38521370-38521408)
chr8 (263-315)||(22432243-22432296)
chr8 (263-315)||(27576883-27576936)
chr8 (263-315)||(29182527-29182580)
[»] chr1 (19 HSPs)
chr1 (130-322)||(26355057-26355249)
chr1 (24-129)||(26354922-26355027)
chr1 (24-124)||(324596-324696)
chr1 (24-124)||(29599353-29599453)
chr1 (30-124)||(48184162-48184256)
chr1 (130-215)||(29599234-29599318)
chr1 (130-215)||(324731-324815)
chr1 (130-213)||(26014519-26014601)
chr1 (30-108)||(16764636-16764714)
chr1 (30-108)||(6165148-6165226)
chr1 (30-108)||(10801668-10801746)
chr1 (130-215)||(48184291-48184369)
chr1 (24-87)||(26014443-26014506)
chr1 (34-87)||(17481113-17481166)
chr1 (132-188)||(6165049-6165104)
chr1 (132-188)||(10801568-10801623)
chr1 (132-188)||(16764537-16764592)
chr1 (130-195)||(17480990-17481054)
chr1 (263-315)||(48184347-48184400)
[»] chr6 (4 HSPs)
chr6 (130-322)||(32397284-32397474)
chr6 (24-129)||(32397149-32397254)
chr6 (33-120)||(9302935-9303022)
chr6 (130-171)||(9303056-9303096)
[»] chr7 (11 HSPs)
chr7 (130-283)||(35012892-35013041)
chr7 (24-124)||(6472346-6472446)
chr7 (24-124)||(9371724-9371824)
chr7 (30-124)||(35013076-35013171)
chr7 (130-215)||(9371859-9371943)
chr7 (130-215)||(21358005-21358089)
chr7 (130-213)||(6472229-6472311)
chr7 (80-124)||(21358124-21358168)
chr7 (130-198)||(44660361-44660428)
chr7 (263-315)||(21357974-21358027)
chr7 (263-314)||(9371921-9371973)
[»] chr4 (25 HSPs)
chr4 (130-283)||(47825960-47826109)
chr4 (182-312)||(54785047-54785175)
chr4 (24-124)||(21604343-21604443)
chr4 (24-124)||(54785290-54785390)
chr4 (24-124)||(8433082-8433182)
chr4 (24-124)||(46164468-46164568)
chr4 (24-124)||(47825826-47825925)
chr4 (130-215)||(21604478-21604562)
chr4 (130-215)||(46164349-46164433)
chr4 (130-213)||(8432965-8433047)
chr4 (130-198)||(21355919-21355986)
chr4 (130-198)||(13740252-13740319)
chr4 (130-198)||(23218220-23218287)
chr4 (130-198)||(45144024-45144091)
chr4 (130-198)||(45152793-45152860)
chr4 (130-194)||(54785192-54785255)
chr4 (30-68)||(13740399-13740437)
chr4 (30-68)||(21355792-21355830)
chr4 (30-68)||(23218367-23218405)
chr4 (30-66)||(45143906-45143942)
chr4 (30-66)||(45152675-45152711)
chr4 (143-189)||(33753972-33754018)
chr4 (143-196)||(3187588-3187641)
chr4 (263-315)||(21604540-21604593)
chr4 (263-315)||(46164318-46164371)
[»] chr5 (13 HSPs)
chr5 (24-124)||(3174081-3174181)
chr5 (24-124)||(10572620-10572720)
chr5 (24-124)||(32863565-32863665)
chr5 (130-215)||(32863696-32863780)
chr5 (130-213)||(10572755-10572837)
chr5 (130-198)||(3174216-3174283)
chr5 (130-198)||(19209112-19209179)
chr5 (148-198)||(18739403-18739453)
chr5 (143-198)||(23737946-23738001)
chr5 (130-195)||(43300226-43300290)
chr5 (43-78)||(41958732-41958767)
chr5 (34-68)||(18739525-18739559)
chr5 (130-191)||(41958605-41958665)
[»] chr2 (8 HSPs)
chr2 (24-124)||(25697669-25697769)
chr2 (130-213)||(25697552-25697634)
chr2 (130-198)||(3935372-3935439)
chr2 (30-83)||(8485586-8485639)
chr2 (30-68)||(3935519-3935557)
chr2 (130-189)||(38978382-38978440)
chr2 (143-189)||(32339606-32339652)
chr2 (30-68)||(38978520-38978558)
[»] chr3 (8 HSPs)
chr3 (32-124)||(9456339-9456431)
chr3 (130-215)||(9456466-9456550)
chr3 (130-198)||(21239487-21239554)
chr3 (130-198)||(52893483-52893550)
chr3 (130-196)||(2338818-2338881)
chr3 (30-68)||(2338961-2338999)
chr3 (30-68)||(52893365-52893403)
chr3 (263-315)||(9456528-9456581)
[»] scaffold0054 (2 HSPs)
scaffold0054 (30-108)||(2795-2873)
scaffold0054 (132-188)||(2917-2972)
[»] scaffold0285 (2 HSPs)
scaffold0285 (30-108)||(8482-8560)
scaffold0285 (132-188)||(8383-8438)
[»] scaffold0393 (2 HSPs)
scaffold0393 (130-198)||(11169-11236)
scaffold0393 (30-68)||(11313-11351)
[»] scaffold1160 (2 HSPs)
scaffold1160 (30-68)||(2401-2439)
scaffold1160 (130-198)||(2519-2580)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 780537 - 780238
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  780537 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 780438  T
Q  124 ccttctggt-aatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaatttaatattc 222  Q
    ||||||    ||     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  780437 ccttctccacaaaccctaatttgaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaatttaatattc 780338  T
Q  223 tggtaatgatttgtaattttgtatgtgtgtttagtaatgatttagtgatgtgaaattgaatttttgagtttttgattgctactgattgctacaaaaatgt 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  780337 tggtaatgatttgtaattttgtatgtgtatttagtaatgatttagtaatgtgaaattgaatttttgagtttttgattgctagtgattgctacaaaaatgt 780238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 130 - 322
Target Start/End: Complemental strand, 774748 - 774556
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaatttaatattctggtaat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  774748 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatatgataattacatgttctttagtactgtgaaattgaatttaatattctggtaat 774649  T
Q  230 gatttgtaattttgtatgtgtgtttagtaatgatttagtgatgtgaaattgaatttttgagtttttgattgctactgattgctacaaaaatgt 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  774648 gatttgtaattttgtatgtgtgtttagtaatgatttagtgatgtgaaattgaatttttgagtttttgattgctactgattgctacaaaaatgt 774556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 6786489 - 6786680
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaatttaatattctggtaat 229  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  6786489 ggtaatgtgaaatttgaatgtaacttccttcaattctgattttgatttgatgattacatgtt-tttagtaatgtgaaattgaatttaatattctggtaat 6786587  T
Q  230 gatttgtaattttgtatgtgtgtttagtaatgatttagtgatgtgaaattgaatttttgagtttttgattgctactgattgctacaaaaatgt 322  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6786588 gatttgtaattttgtatgtgtgtttagtaatgatttagtaatgtgaaattgaatttttgagtttttgattgctactgtttgctacaaaaatgt 6786680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 774883 - 774778
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  774883 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 774784  T
Q  124 ccttct 129  Q
    ||||||    
T  774783 ccttct 774778  T

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Target: chr8; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 18068492 - 18068592
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18068492 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcatcctcctcaatcttctgtattgattctttagtttagagagctatctccatccat 18068591  T
Q  124 c 124  Q
    |    
T  18068592 c 18068592  T

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Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 22432493 - 22432393
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22432493 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 22432394  T
Q  124 c 124  Q
    |    
T  22432393 c 22432393  T

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Target: chr8; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 27576680 - 27576780
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27576680 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 27576779  T
Q  124 c 124  Q
    |    
T  27576780 c 27576780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 29182777 - 29182677
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29182777 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 29182678  T
Q  124 c 124  Q
    |    
T  29182677 c 29182677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 22432358 - 22432274
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  22432358 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaattt 22432274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 29182642 - 29182558
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  29182642 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaattt 29182558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 43916026 - 43916118
Alignment:
Q  30 ccgcgaccactctcct--ccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatc 120  Q
    |||||||||||||| |  ||||||||||||||||||| |||||||||||| || |||||| ||||||||| ||||||||||||||||||||||    
T  43916026 ccgcgaccactctcatttccttctccatccatcaccgtcgcatcctcctctattttctgtgttgattcttcagtttagagagctatctccatc 43916118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 22014767 - 22014845
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagaga 108  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||| || ||||||||||    
T  22014767 ccgcgaccactctcctccttctccatccatcaccgctgcatactcctccatcttctgtttcgattattcagtttagaga 22014845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 27576815 - 27576905
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattc------tgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||      ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  27576815 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaattt 27576905  T

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Target: chr8; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 1668157 - 1668224
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  1668157 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 1668224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 16658872 - 16658939
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  16658872 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 16658939  T

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Target: chr8; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 38521293 - 38521226
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  38521293 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 38521226  T

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Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 6786367 - 6786409
Alignment:
Q  26 cgaaccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6786367 cgaaccgcgaccactctcctccttctccatccatcaccgccgc 6786409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 1668039 - 1668077
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1668039 ccgcgaccactctcctccttctccatccatcaccgccgc 1668077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 16658754 - 16658792
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16658754 ccgcgaccactctcctccttctccatccatcaccgccgc 16658792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 22014889 - 22014954
Alignment:
Q  132 taatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||| |||||||||||||||||||| ||||| |  |||||| ||||||| |||||||||    
T  22014889 taatgtgaaatt-gaatgtaatttccttcaattatgattattgtttgatgattacatattctttagt 22014954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 11472426 - 11472357
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattc----tgattctgatttgataattacatgttcttta 196  Q
    |||||||||||||| ||||||||||||||||||||     |||||||||| |||| |||||||||||||||    
T  11472426 ggtaatgtgaaatt-gaatgtaatttccttcaattaattatgattctgatatgatgattacatgttcttta 11472357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 38521408 - 38521370
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  38521408 ccgcgaccactcttctccttctccatccatcactgccgc 38521370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 22432296 - 22432243
Alignment:
Q  263 tttagtgatgtgaaattgaatttttg-agtttttgattgctactgattgctaca 315  Q
    |||||| ||||||||||||||||||  |||||| |||||||||||||| |||||    
T  22432296 tttagtaatgtgaaattgaatttttttagttttcgattgctactgattactaca 22432243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 27576883 - 27576936
Alignment:
Q  263 tttagtgatgtgaaattgaa-tttttgagtttttgattgctactgattgctaca 315  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||||||| |||||    
T  27576883 tttagtaatgtgaaattgaatttttttagttttcgattgctactgattactaca 27576936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 29182580 - 29182527
Alignment:
Q  263 tttagtgatgtgaaattgaatttttg-agtttttgattgctactgattgctaca 315  Q
    |||||| ||||||||||||||||||  |||||| |||||||||||||| |||||    
T  29182580 tttagtaatgtgaaattgaatttttttagttttcgattgctactgattactaca 29182527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 26355057 - 26355249
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaatttaatattctggtaat 229  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  26355057 ggtaatgtgaaatttgaatgtaacttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaatttaatattctggtaat 26355156  T
Q  230 gatttgtaattttgtatgtgtgtttagtaatgatttagtgatgtgaaattgaatttttgagtttttgattgctactgattgctacaaaaatgt 322  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26355157 gatttgtaattttgtatgtgtgtttagtaatgatttagtaatgtgaaattgaatttttgagtttttgattgctactgattgctacaaaaatgt 26355249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 26354922 - 26355027
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26354922 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctatagttcagagagctatctccatccat 26355021  T
Q  124 ccttct 129  Q
    ||||||    
T  26355022 ccttct 26355027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 324596 - 324696
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  324596 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 324695  T
Q  124 c 124  Q
    |    
T  324696 c 324696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 29599453 - 29599353
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29599453 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 29599354  T
Q  124 c 124  Q
    |    
T  29599353 c 29599353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 48184162 - 48184256
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccatc 124  Q
    ||||||||||||| || ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48184162 ccgcgaccactcttcttcttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccatc 48184256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 29599318 - 29599234
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  29599318 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaattt 29599234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 324731 - 324815
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  324731 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattagatgttctttagtaatgtgaaattgaattt 324815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 26014519 - 26014601
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaat 213  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  26014519 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttatttagtaatgtgaaattgaat 26014601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 16764714 - 16764636
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagaga 108  Q
    |||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||    
T  16764714 ccgcgaccactctcctccttctccatccatcaccactgcatactcctccatcttctgttttgattctttagtttagaga 16764636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 6165226 - 6165148
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagaga 108  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||| ||||||||||    
T  6165226 ccgcgaccactctcctccttctccatccatcaccgctgcatactcctccatcttctgtttcgattcttcagtttagaga 6165148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 10801746 - 10801668
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagaga 108  Q
    |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| | ||||||| ||||||||||    
T  10801746 ccgcgaccactctcctccttctccatccatcaccgctgcatacttctccatcttctgtttcgattcttcagtttagaga 10801668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 48184291 - 48184369
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||      ||||||||| |||||||||||||||||| |||||||||||||||    
T  48184291 ggtaatgtgaaatt-gaatgtaatttccttcaattc------tgatttgatgattacatgttctttagtaatgtgaaattgaattt 48184369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 26014443 - 26014506
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgt 87  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||    
T  26014443 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgt 26014506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 17481166 - 17481113
Alignment:
Q  34 gaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgt 87  Q
    |||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  17481166 gaccactcacctccttctccatccatcaccggtgcatcctcctccatcttctgt 17481113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 6165104 - 6165049
Alignment:
Q  132 taatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacat 188  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||| |||||||    
T  6165104 taatgtgaaatt-gaatgtaattgtcttcaattctgattctgatttgatgattacat 6165049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 10801623 - 10801568
Alignment:
Q  132 taatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacat 188  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||| |||||||    
T  10801623 taatgtgaaatt-gaatgtaattgtcttcaattctgattctgatttgatgattacat 10801568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 16764592 - 16764537
Alignment:
Q  132 taatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacat 188  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||| |||||||    
T  16764592 taatgtgaaatt-gaatgtaattgtcttcaattctgattctgatttgatgattacat 16764537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 17481054 - 17480990
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttcttt 195  Q
    |||||||||||||| ||||||| |||||||||| | ||||| |  |||||| ||||||||||||||    
T  17481054 ggtaatgtgaaatt-gaatgtattttccttcaaatatgattattctttgatgattacatgttcttt 17480990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 48184347 - 48184400
Alignment:
Q  263 tttagtgatgtgaaattgaa-tttttgagtttttgattgctactgattgctaca 315  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||||||| |||||    
T  48184347 tttagtaatgtgaaattgaatttttttagttttcgattgctactgattactaca 48184400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 32397284 - 32397474
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaatttaatattctggtaat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  32397284 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaatttaatattctggtaat 32397383  T
Q  230 gatttgtaattttgtatgtgtgtttagtaatgatttagtgatgtgaaattgaatttttgagtttttgattgctactgattgctacaaaaatgt 322  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32397384 gatttgtaattttgta--tgtgtttagtaatgatttagtaatgtgaaattgattttttgagtttttgattgctactgattgctacaaaaatgt 32397474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 32397149 - 32397254
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  32397149 ggcgatccccgaccactctcctcctgctccatccatcaccgccgcatcctcctccatcttcttaattgattctttagtttagagagctatctccatccat 32397248  T
Q  124 ccttct 129  Q
    ||||||    
T  32397249 ccttct 32397254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 9302935 - 9303022
Alignment:
Q  33 cgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatc 120  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||  |||| |||||| ||||||||||    
T  9302935 cgaccactctcctccttctccatccatcaccgctgcatcctactccatcttctatattgattctccagttcagagagttatctccatc 9303022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 9303056 - 9303096
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattc 171  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  9303056 ggtaatgtgaaatt-gaatgtaatttccttcaattttgattc 9303096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 35013041 - 35012892
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaatttaatattctggtaat 229  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  35013041 ggtaatgtgaaatt-gaatgtaatttccttcaatcctgattctgatttgataattacatgttcttgagtaatgtgaaattgaatgtaatattctggtaat 35012943  T
Q  230 gatttgtaattttgtatgtgtgtttagtaatgatttagtgatgtgaaattgaat 283  Q
    ||||||||||| ||||||||| ||   |||||||||||||||||||||||||||    
T  35012942 gatttgtaattgtgtatgtgtctt---taatgatttagtgatgtgaaattgaat 35012892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 6472446 - 6472346
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6472446 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 6472347  T
Q  124 c 124  Q
    |    
T  6472346 c 6472346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 9371724 - 9371824
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9371724 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 9371823  T
Q  124 c 124  Q
    |    
T  9371824 c 9371824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 35013171 - 35013076
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgcatcctcc-tccatcttctgtattgattctttagtttagagagctatctccatccatc 124  Q
    ||||||||||||| |||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  35013171 ccgcgaccactcttctccttctccatccatcaccgccgcaccccccctcaatcttctgtattgattctttagtttagagagctatctccatccatc 35013076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 9371859 - 9371943
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  9371859 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaattt 9371943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 21358089 - 21358005
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  21358089 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaattt 21358005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 6472311 - 6472229
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaat 213  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  6472311 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaat 6472229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 21358168 - 21358124
Alignment:
Q  80 tcttctgtattgattctttagtttagagagctatctccatccatc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21358168 tcttctgtattgattctttagtttagagagctatctccatccatc 21358124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 44660361 - 44660428
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||| ||||||||||||| |  ||| || |||||||||||||||||    
T  44660361 ggtaatgtgaaatt-gaatgtaatttcgttcaattctgatttttctttaatgattacatgttctttagt 44660428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 21358027 - 21357974
Alignment:
Q  263 tttagtgatgtgaaattgaatttttg-agtttttgattgctactgattgctaca 315  Q
    |||||| ||||||||||||||||||  |||||| |||||||||||||| |||||    
T  21358027 tttagtaatgtgaaattgaatttttttagttttcgattgctactgattactaca 21357974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 9371921 - 9371973
Alignment:
Q  263 tttagtgatgtgaaattgaa-tttttgagtttttgattgctactgattgctac 314  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||||||| ||||    
T  9371921 tttagtaatgtgaaattgaatttttttagttttcgattgctactgattactac 9371973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 130 - 283
Target Start/End: Original strand, 47825960 - 47826109
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaatttaatattctggtaat 229  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  47825960 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaatttaatattcgggtaat 47826058  T
Q  230 gatttgtaattttgtatgtgtgtttagtaatgatttagtgatgtgaaattgaat 283  Q
    |||||| |||| ||||||||| ||   |||||||||||||||||||||||||||    
T  47826059 gatttgcaattgtgtatgtgtctt---taatgatttagtgatgtgaaattgaat 47826109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 182 - 312
Target Start/End: Complemental strand, 54785175 - 54785047
Alignment:
Q  182 attacatgttctttagtactgtgaaattgaatttaatattctggtaatgatttgtaattttgtatgtgtgtttagtaatgatttagtgatgtgaaattga 281  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||   | |||||||||| ||||||||||||    
T  54785175 attacatgttctttagtaatgtgaaattgaatgtaatattctggtaatgatttgtaattttgtatgtgtctt---tgatgatttagtaatgtgaaattga 54785079  T
Q  282 a-tttttgagtttttgattgctactgattgct 312  Q
    | ||||| |||||| |||||||||||||||||    
T  54785078 atttttttagttttcgattgctactgattgct 54785047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 21604343 - 21604443
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21604343 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 21604442  T
Q  124 c 124  Q
    |    
T  21604443 c 21604443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 54785390 - 54785290
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||    
T  54785390 ggcgagccgcaaccactctcctccttctccatccatcaccgccgcatcctcctcgatcttctgtattgattctttagtttagggagctgtctccatccat 54785291  T
Q  124 c 124  Q
    |    
T  54785290 c 54785290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 8433182 - 8433082
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  8433182 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagaaagctatctccatccat 8433083  T
Q  124 c 124  Q
    |    
T  8433082 c 8433082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 46164568 - 46164468
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  46164568 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctctatcttctatattgattctttagtttagagagctatctccatccat 46164469  T
Q  124 c 124  Q
    |    
T  46164468 c 46164468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 47825826 - 47825925
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47825826 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcaccc-cctcaatcttctgtattgattctttagtttagagagctatctccatccat 47825924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 21604478 - 21604562
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  21604478 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaattt 21604562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 46164433 - 46164349
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  46164433 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaattt 46164349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 8433047 - 8432965
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaat 213  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  8433047 ggtaatgtgaaatt-gaatgttatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaat 8432965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 21355919 - 21355986
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21355919 ggtaacgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 21355986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 13740319 - 13740252
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  13740319 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 13740252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 23218287 - 23218220
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  23218287 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 23218220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 45144024 - 45144091
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  45144024 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 45144091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 45152793 - 45152860
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  45152793 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 45152860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 54785255 - 54785192
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctt 194  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  54785255 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattctgatttgatgattacatgttctt 54785192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 13740437 - 13740399
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13740437 ccgcgaccactctcctccttctccatccatcaccgccgc 13740399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 21355792 - 21355830
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21355792 ccgcgaccactctcctccttctccatccatcaccgccgc 21355830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 23218405 - 23218367
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  23218405 ccgcgaccactctcctccttctccatccatcactgccgc 23218367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 45143906 - 45143942
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgcc 66  Q
    |||||| ||||||||||||||||||||||||||||||    
T  45143906 ccgcgatcactctcctccttctccatccatcaccgcc 45143942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 45152675 - 45152711
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgcc 66  Q
    |||||| ||||||||||||||||||||||||||||||    
T  45152675 ccgcgatcactctcctccttctccatccatcaccgcc 45152711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 33754018 - 33753972
Alignment:
Q  143 ttgaatgtaatttccttcaattctgattctgatttgataattacatg 189  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||||    
T  33754018 ttgaatgtaattttcttcaattatgattttgatttgatgattacatg 33753972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 3187641 - 3187588
Alignment:
Q  143 ttgaatgtaatttccttcaattctgattctgatttgataattacatgttcttta 196  Q
    ||||||||| ||||||| || |||||||||  |||||| |||||||||||||||    
T  3187641 ttgaatgtattttcctttaaatctgattcttctttgatgattacatgttcttta 3187588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 21604540 - 21604593
Alignment:
Q  263 tttagtgatgtgaaattgaa-tttttgagtttttgattgctactgattgctaca 315  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||||||| |||||    
T  21604540 tttagtaatgtgaaattgaatttttttagttttcgattgctactgattactaca 21604593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 46164371 - 46164318
Alignment:
Q  263 tttagtgatgtgaaattgaatttttg-agtttttgattgctactgattgctaca 315  Q
    |||||| ||||||||||||||||||  |||||| |||||||||||||| |||||    
T  46164371 tttagtaatgtgaaattgaatttttttagttttcgattgctactgattactaca 46164318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 3174081 - 3174181
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3174081 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 3174180  T
Q  124 c 124  Q
    |    
T  3174181 c 3174181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 10572620 - 10572720
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10572620 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 10572719  T
Q  124 c 124  Q
    |    
T  10572720 c 10572720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 32863565 - 32863665
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32863565 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagagagctatctccatccat 32863664  T
Q  124 c 124  Q
    |    
T  32863665 c 32863665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 32863696 - 32863780
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  32863696 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtattgtgaaattgaattt 32863780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 10572755 - 10572837
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaat 213  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||    
T  10572755 ggtaatgtgaaatt-gaatgtaatttccttcaattgtgattctgatttgatgattacatgttctttagtaatgtgaaattgaat 10572837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 3174216 - 3174283
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  3174216 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 3174283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 19209179 - 19209112
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    ||||| |||||||| |||||||||||||||||| |||||||||| ||| || |||||||||||||||||    
T  19209179 ggtaacgtgaaatt-gaatgtaatttccttcaaatctgattctgctttaatgattacatgttctttagt 19209112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 18739453 - 18739403
Alignment:
Q  148 tgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  18739453 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 18739403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 23737946 - 23738001
Alignment:
Q  143 ttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||||||||| |||||||||  ||| || |||||||||||||||||    
T  23737946 ttgaatgtaatttccttcaaatctgattcttctttaatgattacatgttctttagt 23738001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 43300226 - 43300290
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttcttt 195  Q
    |||||||||||||| |||||||||||| ||||||||||||| |  ||| || ||||||||||||||    
T  43300226 ggtaatgtgaaatt-gaatgtaatttcgttcaattctgatttttctttaatgattacatgttcttt 43300290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 41958767 - 41958732
Alignment:
Q  43 cctccttctccatccatcaccgccgcatcctcctcc 78  Q
    |||||||||||||||||||||| |||||||||||||    
T  41958767 cctccttctccatccatcaccgtcgcatcctcctcc 41958732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 18739559 - 18739525
Alignment:
Q  34 gaccactctcctccttctccatccatcaccgccgc 68  Q
    ||||||||||||| |||||||||||||||||||||    
T  18739559 gaccactctcctctttctccatccatcaccgccgc 18739525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 41958665 - 41958605
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgtt 191  Q
    |||||||||||||| |||||||||||| ||||||||||||| |  ||| || ||||||||||    
T  41958665 ggtaatgtgaaatt-gaatgtaatttcgttcaattctgatttttctttaatgattacatgtt 41958605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 25697769 - 25697669
Alignment:
Q  24 ggcgaaccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccat 123  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25697769 ggcgagccgcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtatagattctttagtttagagagctatctccatccat 25697670  T
Q  124 c 124  Q
    |    
T  25697669 c 25697669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 25697634 - 25697552
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaat 213  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  25697634 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaat 25697552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 3935439 - 3935372
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| | ||||||| |||||||||||||||||    
T  3935439 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattataatttgatgattacatgttctttagt 3935372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 8485639 - 8485586
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatctt 83  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  8485639 ccgcgaccactcacctccttctccatccatcactggcgcatcctcctccatctt 8485586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 3935557 - 3935519
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3935557 ccgcgaccactctcctccttctccatccatcaccgccgc 3935519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 38978440 - 38978382
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatg 189  Q
    |||| ||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||    
T  38978440 ggtagtgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatg 38978382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 32339606 - 32339652
Alignment:
Q  143 ttgaatgtaatttccttcaattctgattctgatttgataattacatg 189  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  32339606 ttgaatgtaattttcttcaattatgattctgatttgatgattacatg 32339652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 38978558 - 38978520
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  38978558 ccgcgatcactctcctccttctccatccatcaccgccgc 38978520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 9456339 - 9456431
Alignment:
Q  32 gcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagagagctatctccatccatc 124  Q
    ||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  9456339 gcgaccactcttctccttctccatccatcaccgccgcacccccctcaatcttctgtattgattctttagtttagacagctatctccatccatc 9456431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 9456466 - 9456550
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagtactgtgaaattgaattt 215  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  9456466 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagtaatgtgaaattgaattt 9456550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 21239487 - 21239554
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  21239487 ggtaatgtgaaatt-gaatgtaatttccttcaattctgattatgatttgatgattacatgttctttagt 21239554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 52893483 - 52893550
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  52893483 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 52893550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 2338881 - 2338818
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttcttta 196  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||||   |||||||||||||||    
T  2338881 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttg--tattacatgttcttta 2338818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 2338999 - 2338961
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2338999 ccgcgaccactctcctccttctccatccatcactgccgc 2338961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 52893365 - 52893403
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  52893365 ccgcgatcactctcctccttctccatccatcaccgccgc 52893403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 9456528 - 9456581
Alignment:
Q  263 tttagtgatgtgaaattgaa-tttttgagtttttgattgctactgattgctaca 315  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||||||| |||||    
T  9456528 tttagtaatgtgaaattgaatttttttagttttcgattgctactgattactaca 9456581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 2795 - 2873
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagaga 108  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||| ||||||||||    
T  2795 ccgcgaccactctcctccttctccatccatcaccgctgcatactcctccatcttctgtttcgattcttcagtttagaga 2873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 2917 - 2972
Alignment:
Q  132 taatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacat 188  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||| |||||||    
T  2917 taatgtgaaatt-gaatgtaattgtcttcaattctgattctgatttgatgattacat 2972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 8560 - 8482
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgcatcctcctccatcttctgtattgattctttagtttagaga 108  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| | ||||||| ||||||||||    
T  8560 ccgcgaccactctcctccttctccatccatcactgctgcatactcctccatcttctgtttcgattcttcagtttagaga 8482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 8438 - 8383
Alignment:
Q  132 taatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacat 188  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||| |||||||    
T  8438 taatgtgaaatt-gaatgtaattgtcttcaattctgattctgatttgatgattacat 8383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 11236 - 11169
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  11236 ggtaatgtgaaatt-gaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagt 11169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 11351 - 11313
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  11351 ccgcgaccactttcctccttctccatccatcaccgccgc 11313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 2401 - 2439
Alignment:
Q  30 ccgcgaccactctcctccttctccatccatcaccgccgc 68  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2401 ccgcgaccactctcctccttctccatccatcaccgccgc 2439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 2519 - 2580
Alignment:
Q  130 ggtaatgtgaaatttgaatgtaatttccttcaattctgattctgatttgataattacatgttctttagt 198  Q
    |||||||||||||| |||||||||||||||||      ||| ||||||||| |||||||||||||||||    
T  2519 ggtaatgtgaaatt-gaatgtaatttccttca------attatgatttgatgattacatgttctttagt 2580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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