View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17215_low_34 (Length: 336)

Name: NF17215_low_34
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17215_low_34
NF17215_low_34
[»] chr7 (38 HSPs)
chr7 (20-322)||(48539203-48539502)
chr7 (14-78)||(982965-983029)
chr7 (14-78)||(19277309-19277373)
chr7 (20-78)||(21326865-21326923)
chr7 (22-78)||(24527613-24527669)
chr7 (23-77)||(30216086-30216140)
chr7 (14-78)||(4501275-4501338)
chr7 (103-151)||(45974816-45974864)
chr7 (99-142)||(25187144-25187187)
chr7 (20-78)||(45613869-45613927)
chr7 (14-75)||(22198002-22198063)
chr7 (14-75)||(22239758-22239819)
chr7 (14-78)||(32584617-32584681)
chr7 (14-77)||(5825289-5825352)
chr7 (99-150)||(19277134-19277185)
chr7 (105-151)||(21327057-21327103)
chr7 (33-78)||(40726507-40726552)
chr7 (103-143)||(4501109-4501149)
chr7 (14-78)||(27521487-27521551)
chr7 (36-76)||(28517316-28517356)
chr7 (106-142)||(32682023-32682059)
chr7 (99-142)||(22197838-22197881)
chr7 (99-142)||(22239940-22239983)
chr7 (14-77)||(43856890-43856953)
chr7 (103-142)||(45614059-45614098)
chr7 (20-78)||(10905140-10905197)
chr7 (20-78)||(42295211-42295269)
chr7 (107-151)||(982791-982835)
chr7 (36-72)||(3676677-3676713)
chr7 (107-151)||(43334052-43334096)
chr7 (107-142)||(27521322-27521357)
chr7 (20-75)||(36558898-36558953)
chr7 (104-142)||(19837069-19837107)
chr7 (103-141)||(42295394-42295432)
chr7 (14-75)||(6634993-6635054)
chr7 (105-142)||(24527435-24527472)
chr7 (103-152)||(41767701-41767750)
chr7 (108-140)||(5972438-5972470)
[»] chr3 (32 HSPs)
chr3 (14-78)||(53785725-53785789)
chr3 (14-78)||(52741539-52741603)
chr3 (14-78)||(7900874-7900938)
chr3 (20-76)||(32546817-32546873)
chr3 (30-78)||(44198799-44198847)
chr3 (99-151)||(53785551-53785603)
chr3 (99-142)||(4764005-4764048)
chr3 (23-78)||(26772783-26772838)
chr3 (99-142)||(32546646-32546689)
chr3 (99-139)||(44687-44727)
chr3 (14-78)||(37133026-37133090)
chr3 (14-78)||(39583256-39583320)
chr3 (26-78)||(52411918-52411970)
chr3 (22-77)||(5338667-5338722)
chr3 (22-77)||(26856790-26856845)
chr3 (23-78)||(38670907-38670962)
chr3 (99-142)||(52741725-52741768)
chr3 (22-75)||(3443342-3443395)
chr3 (36-76)||(46940799-46940839)
chr3 (14-78)||(54508411-54508475)
chr3 (99-142)||(39661398-39661441)
chr3 (14-77)||(51234632-51234695)
chr3 (21-75)||(49017986-49018040)
chr3 (85-151)||(26276452-26276515)
chr3 (21-77)||(38978827-38978883)
chr3 (14-77)||(38146072-38146135)
chr3 (103-142)||(44198618-44198657)
chr3 (14-75)||(7502041-7502103)
chr3 (99-133)||(13582370-13582404)
chr3 (103-132)||(49017828-49017857)
chr3 (20-72)||(4473083-4473135)
chr3 (99-151)||(21552506-21552558)
[»] chr1 (29 HSPs)
chr1 (14-78)||(29169820-29169884)
chr1 (23-78)||(31737350-31737405)
chr1 (20-78)||(19035469-19035527)
chr1 (20-78)||(28041154-28041212)
chr1 (20-78)||(45659675-45659733)
chr1 (99-150)||(21472846-21472897)
chr1 (20-78)||(21473025-21473083)
chr1 (99-140)||(7213096-7213137)
chr1 (25-78)||(22346922-22346975)
chr1 (99-143)||(868614-868658)
chr1 (99-143)||(1114081-1114125)
chr1 (14-62)||(2898718-2898766)
chr1 (107-151)||(19035321-19035365)
chr1 (14-78)||(20259824-20259888)
chr1 (99-139)||(24177724-24177764)
chr1 (14-78)||(34644582-34644646)
chr1 (14-76)||(2764495-2764557)
chr1 (20-78)||(4862016-4862074)
chr1 (103-137)||(22346751-22346785)
chr1 (23-76)||(24177540-24177593)
chr1 (107-143)||(31737543-31737579)
chr1 (14-78)||(38731625-38731689)
chr1 (103-142)||(28041344-28041383)
chr1 (99-142)||(44270008-44270051)
chr1 (99-142)||(45835398-45835441)
chr1 (40-75)||(50314654-50314689)
chr1 (36-72)||(25375866-25375902)
chr1 (111-143)||(28493556-28493588)
chr1 (106-142)||(29170404-29170440)
[»] scaffold0009 (2 HSPs)
scaffold0009 (20-78)||(103128-103186)
scaffold0009 (99-142)||(102957-103000)
[»] chr2 (30 HSPs)
chr2 (20-78)||(4413093-4413151)
chr2 (20-78)||(41867935-41867993)
chr2 (22-78)||(9685442-9685498)
chr2 (20-75)||(17344660-17344715)
chr2 (14-77)||(20142753-20142816)
chr2 (20-78)||(18744981-18745039)
chr2 (24-78)||(28225026-28225080)
chr2 (29-78)||(19161810-19161859)
chr2 (99-150)||(41868120-41868171)
chr2 (99-140)||(3208457-3208498)
chr2 (104-144)||(42122666-42122706)
chr2 (31-78)||(34814846-34814893)
chr2 (99-145)||(4413279-4413325)
chr2 (20-78)||(23484965-23485022)
chr2 (102-151)||(1472337-1472386)
chr2 (102-143)||(2248492-2248533)
chr2 (103-144)||(13413200-13413241)
chr2 (99-151)||(17344480-17344532)
chr2 (99-142)||(18745167-18745210)
chr2 (36-77)||(5532457-5532498)
chr2 (111-151)||(5536691-5536731)
chr2 (107-151)||(20143166-20143210)
chr2 (99-142)||(2886829-2886872)
chr2 (99-142)||(4849676-4849719)
chr2 (107-142)||(15515368-15515403)
chr2 (20-62)||(13147143-13147185)
chr2 (35-76)||(32029115-32029156)
chr2 (30-78)||(2886642-2886690)
chr2 (36-72)||(10579812-10579848)
chr2 (110-142)||(34360368-34360400)
[»] chr5 (31 HSPs)
chr5 (14-78)||(42921713-42921777)
chr5 (23-78)||(13166937-13166992)
chr5 (14-78)||(37873665-37873729)
chr5 (35-78)||(14423715-14423758)
chr5 (36-78)||(430640-430682)
chr5 (33-78)||(35310483-35310528)
chr5 (22-78)||(32269824-32269880)
chr5 (33-77)||(33692083-33692127)
chr5 (34-78)||(34335373-34335417)
chr5 (20-78)||(43129556-43129614)
chr5 (37-78)||(27336732-27336773)
chr5 (14-78)||(14723271-14723335)
chr5 (99-142)||(15292238-15292281)
chr5 (35-78)||(25663059-25663102)
chr5 (99-142)||(26212796-26212839)
chr5 (20-75)||(35455978-35456033)
chr5 (20-78)||(38875660-38875718)
chr5 (20-73)||(22188687-22188740)
chr5 (25-78)||(32230534-32230587)
chr5 (106-151)||(42921540-42921585)
chr5 (30-78)||(3114190-3114238)
chr5 (14-77)||(7716197-7716261)
chr5 (103-139)||(14423545-14423581)
chr5 (22-78)||(15292053-15292109)
chr5 (102-142)||(32270012-32270052)
chr5 (14-70)||(41343473-41343529)
chr5 (37-77)||(43115485-43115525)
chr5 (111-142)||(15507566-15507597)
chr5 (20-78)||(26212610-26212668)
chr5 (110-144)||(38875492-38875526)
chr5 (36-77)||(9829380-9829421)
[»] chr8 (21 HSPs)
chr8 (99-152)||(18804454-18804507)
chr8 (20-78)||(38815316-38815374)
chr8 (99-143)||(500092-500136)
chr8 (14-78)||(3187985-3188049)
chr8 (14-78)||(24125044-24125108)
chr8 (25-78)||(500254-500307)
chr8 (99-142)||(22589549-22589592)
chr8 (103-141)||(24124880-24124918)
chr8 (20-78)||(35740013-35740071)
chr8 (36-78)||(39434705-39434747)
chr8 (14-75)||(6592591-6592652)
chr8 (105-142)||(18596818-18596855)
chr8 (14-78)||(8882344-8882407)
chr8 (24-75)||(6618310-6618361)
chr8 (105-142)||(1187411-1187448)
chr8 (14-75)||(25021844-25021905)
chr8 (35-75)||(37514258-37514298)
chr8 (14-77)||(8619830-8619893)
chr8 (29-73)||(8115842-8115886)
chr8 (22-78)||(10189567-10189623)
chr8 (111-143)||(24450972-24451004)
[»] chr6 (15 HSPs)
chr6 (14-78)||(4165949-4166013)
chr6 (23-77)||(33220739-33220793)
chr6 (14-78)||(4206623-4206687)
chr6 (23-78)||(17249332-17249387)
chr6 (23-78)||(34304521-34304576)
chr6 (20-78)||(45704-45762)
chr6 (14-78)||(959596-959660)
chr6 (99-142)||(45834-45877)
chr6 (20-78)||(34415458-34415516)
chr6 (37-75)||(29338109-29338147)
chr6 (105-140)||(2135023-2135058)
chr6 (20-75)||(24016359-24016414)
chr6 (107-142)||(34562398-34562433)
chr6 (20-78)||(34554304-34554362)
chr6 (43-76)||(34168913-34168946)
[»] chr4 (29 HSPs)
chr4 (14-78)||(50483223-50483287)
chr4 (99-142)||(30940945-30940988)
chr4 (14-75)||(600722-600783)
chr4 (25-78)||(16957569-16957622)
chr4 (21-78)||(30940766-30940822)
chr4 (34-75)||(55933492-55933533)
chr4 (30-78)||(132417-132465)
chr4 (103-143)||(40392771-40392811)
chr4 (14-78)||(56462133-56462197)
chr4 (23-78)||(3330021-3330076)
chr4 (36-78)||(53619624-53619666)
chr4 (20-73)||(34107728-34107781)
chr4 (23-78)||(50000952-50001008)
chr4 (36-76)||(50462975-50463015)
chr4 (103-142)||(600909-600948)
chr4 (14-77)||(7536599-7536662)
chr4 (103-142)||(16955311-16955350)
chr4 (36-78)||(6865847-6865889)
chr4 (26-76)||(11562926-11562976)
chr4 (20-77)||(26521510-26521567)
chr4 (105-142)||(53170364-53170401)
chr4 (23-78)||(31847112-31847167)
chr4 (107-145)||(47585229-47585267)
chr4 (41-78)||(23255747-23255784)
chr4 (22-75)||(25504319-25504372)
chr4 (20-53)||(53170535-53170568)
chr4 (34-78)||(12918399-12918443)
chr4 (23-75)||(46440919-46440971)
chr4 (34-74)||(48656941-48656981)
[»] scaffold0490 (1 HSPs)
scaffold0490 (20-78)||(6356-6414)
[»] scaffold0309 (1 HSPs)
scaffold0309 (99-150)||(5167-5218)
[»] scaffold0186 (1 HSPs)
scaffold0186 (14-74)||(10376-10436)
[»] scaffold0148 (2 HSPs)
scaffold0148 (14-78)||(33266-33330)
scaffold0148 (99-151)||(33092-33144)
[»] scaffold0031 (1 HSPs)
scaffold0031 (34-78)||(49447-49491)
[»] scaffold1768 (1 HSPs)
scaffold1768 (14-77)||(212-275)
[»] scaffold0493 (1 HSPs)
scaffold0493 (22-78)||(8543-8599)
[»] scaffold0470 (1 HSPs)
scaffold0470 (24-75)||(7628-7679)
[»] scaffold0075 (1 HSPs)
scaffold0075 (103-148)||(13304-13349)
[»] scaffold0406 (1 HSPs)
scaffold0406 (99-131)||(6750-6782)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 48539203 - 48539502
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagcggcacagcttgttgcccgcttgcccgcttgccttctattc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||    
T  48539203 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagcggcacaacttgttgcccgcc--cccgcttgccttctattc 48539300  T
Q  120 aagtgtaaataatggtttatataattatatattaaattagatatcttgcatatctccctaactattaaactatcttatgtctgatctaccttccttagaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48539301 aagtgtaaataatggtttatataattatatattaaattagatatcttgcctatctccctaactattaaactatcttatgtctgatctaccttccttagaa 48539400  T
Q  220 actataacacacatcaaaggaaaaggcaaactgtttgaagggtttattgtatgttgagatttgttatgnnnnnnntagcatattattattaactgcaaaa 319  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  48539401 actataacacacatc-aaggaaaaggcaaactgtttgaagggtttattgtatgttgagatttgttatgaaaaaaatagcatattattattaactgcaaaa 48539499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 982965 - 983029
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  982965 aacctctggtgctagaaaaccgaaagtatcaaaagcaaatggtataaaagcatgttgattgtcag 983029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 19277309 - 19277373
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19277309 aacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 19277373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 21326923 - 21326865
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21326923 tggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 21326865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 24527613 - 24527669
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24527613 gtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 24527669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 30216140 - 30216086
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30216140 tgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtca 30216086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 4501275 - 4501338
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||    
T  4501275 aacctctggtgctagaaaacc-aaagtgtcaaaagcaaattatataaaagcatgttgattgtcag 4501338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 45974816 - 45974864
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45974816 ccgcttgtcttctattcaagtgtaaataatggtttatataattatatat 45974864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 25187144 - 25187187
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25187144 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 25187187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 45613927 - 45613869
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||| | |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  45613927 tggtgcttggaaaccgaaagtgtcaaaatcaaatggtataaaaacatgttgattgtcag 45613869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 22198002 - 22198063
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||| || |||||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  22198002 aacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt 22198063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 22239819 - 22239758
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||| || |||||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  22239819 aacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt 22239758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 32584617 - 32584681
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| ||||  ||||||||||||||||||||| ||||||||| |||||||||||    
T  32584617 aacctctggtgctaggaaacataaagtgtcaaaagcaaatggtgtaaaagcatcttgattgtcag 32584681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 5825289 - 5825352
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||| ||||||||| |  |||||||||||||||| ||||||||||||| ||||||||||||||    
T  5825289 aacctctggtgctaggatgccgaaagtgtcaaaagtaaatggtataaaaacatgttgattgtca 5825352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 19277185 - 19277134
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataattatata 150  Q
    |||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  19277185 ttgcccgcctgccttctattcaaatgtaaataatggtttatataaatatata 19277134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 21327057 - 21327103
Alignment:
Q  105 gcttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  21327057 gcttgccttctattcaagtgtaaataatggtttatatatatatatat 21327103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 40726552 - 40726507
Alignment:
Q  33 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||    
T  40726552 ccgaaagtgtcaaaaacaaatggtataaaaacatgttgattgtcag 40726507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 4501149 - 4501109
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatataa 143  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  4501149 ccgcttgccttatattcaagtgtaaataatggtttatataa 4501109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 27521487 - 27521551
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| || |||||| ||||| ||||||||||||| |||| ||||||| ||||||||||||||||    
T  27521487 aacctctgatgctaggaaaccaaaagtgtcaaaagtaaattgtataaatgcatgttgattgtcag 27521551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 28517356 - 28517316
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 76  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  28517356 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 28517316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 32682023 - 32682059
Alignment:
Q  106 cttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||||||||||||||||||||||||||||||    
T  32682023 cttgccttctattcaagtgtaaataatggtttatata 32682059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 22197881 - 22197838
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  22197881 ttgcccgcttgtcttctattcaagagtaaataatggtttatata 22197838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 22239940 - 22239983
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  22239940 ttgcccgcttgtcttctattcaagagtaaataatggtttatata 22239983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 43856890 - 43856953
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||| ||||| ||| ||||| ||| |||||||||||||| ||||||| |||||||||||||||    
T  43856890 aacctctggtgttaggaaaccaaaaatgtcaaaagcaaattgtataaacgcatgttgattgtca 43856953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 45614059 - 45614098
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  45614059 ccgcttgccttctattcaactgtaaataatggtttatata 45614098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 10905140 - 10905197
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||  |||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  10905140 tggtgctaggcaaccaaaagtgtcaaaagcaaatggtat-aaagcatgttgagtgtcag 10905197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 42295269 - 42295211
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||| ||||||||||| | |||| |||||||||||||| |||||||||||||||    
T  42295269 tggtgttaggaaaccgaaagtataaaaaacaaatggtataaaaacatgttgattgtcag 42295211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 982835 - 982791
Alignment:
Q  107 ttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||    
T  982835 ttgccttctattcaagtttaaataatggtttatatatatatatat 982791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 3676677 - 3676713
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgat 72  Q
    ||||||||||||||||||||||||||||||| |||||    
T  3676677 aaagtgtcaaaagcaaatggtataaaagcatattgat 3676713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 43334052 - 43334096
Alignment:
Q  107 ttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    |||| |||||||||||||||||||||||||||||||  |||||||    
T  43334052 ttgcattctattcaagtgtaaataatggtttatatatatatatat 43334096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 27521357 - 27521322
Alignment:
Q  107 ttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||| |||||||||||||||||||||||||||    
T  27521357 ttgccttccattcaagtgtaaataatggtttatata 27521322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 36558953 - 36558898
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||||||||||||| ||| ||||||| ||||||  ||||||| ||||||||||||    
T  36558953 tggtgctagaaaaccaaaaatgtcaaatgcaaattatataaaaacatgttgattgt 36558898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 19837107 - 19837069
Alignment:
Q  104 cgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  19837107 cgcttgccttctatttaagtttaaataatggtttatata 19837069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 42295394 - 42295432
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatat 141  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  42295394 ccgcttgccttctattcaaatataaataatggtttatat 42295432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 6635054 - 6634993
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||| || ||||| |||| ||||| ||||||||||||||| |||||||  |||||||||||    
T  6635054 aacctctgatgctaaaaaatcgaaactgtcaaaagcaaatgatataaaaatatgttgattgt 6634993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 24527472 - 24527435
Alignment:
Q  105 gcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  24527472 gcttgccttttattcaagtgtaaataatgatttatata 24527435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 41767701 - 41767750
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatataattatatatt 152  Q
    ||||||||||||||||||| ||||||||||| | ||||||  ||||||||    
T  41767701 ccgcttgccttctattcaaatgtaaataatgatatatatatatatatatt 41767750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 5972438 - 5972470
Alignment:
Q  108 tgccttctattcaagtgtaaataatggtttata 140  Q
    ||||||||||||||||||||||||| |||||||    
T  5972438 tgccttctattcaagtgtaaataatagtttata 5972470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 53785725 - 53785789
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53785725 aacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 53785789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 52741603 - 52741539
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  52741603 aacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 52741539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 7900874 - 7900938
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| || |||||| || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  7900874 aacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcag 7900938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 32546817 - 32546873
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 76  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||    
T  32546817 tggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagtatgttgattgtc 32546873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 44198799 - 44198847
Alignment:
Q  30 aaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44198799 aaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattctcag 44198847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 53785603 - 53785551
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  53785603 ttgcccgcttgccttctattcaagtgtaaataatggtttatatatatatatat 53785551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 4764005 - 4764048
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4764005 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 4764048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 26772783 - 26772838
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  26772783 tgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 26772838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 32546689 - 32546646
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32546689 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 32546646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 44727 - 44687
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttat 139  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44727 ttgcccgcttgccttctattcaagtgtaaataatggtttat 44687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 37133090 - 37133026
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||  ||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  37133090 aacctctggtgctaagaaaccgaaagtgtaaaaaacaaatggtataaaaacatgttgattgtcag 37133026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 39583320 - 39583256
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| || |||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  39583320 aacctatgatgctaggaaaccgaaagtgtcgaaaacaaatgatataaaagcatgttgattgtcag 39583256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 52411970 - 52411918
Alignment:
Q  26 tagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  52411970 tagaaagctgaaagtgtcaaaagcaaatggaataaaagcatgttgattgtcag 52411918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 5338667 - 5338722
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||    
T  5338667 gtgctaggaagccgaaagtgtcaaaagcaaattgtataaaagcatgttgactgtca 5338722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 26856845 - 26856790
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  26856845 gtgctaggaaatcgaaagcgtcaaaagcagatggtataaaagcatgttgattgtca 26856790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 38670962 - 38670907
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||    
T  38670962 tgctagaaagccaaaagtgtcaaaaacaaattgtataaaagcatgttgattgtcag 38670907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 52741725 - 52741768
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  52741725 ttgcccgctcgccttctattcaagtgtaaataatggtttatata 52741768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 3443395 - 3443342
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||||| |||| ||||||||||| || ||||||||||||||||||||||||||    
T  3443395 gtgctaggaaactgaaagtgtcaacagaaaatggtataaaagcatgttgattgt 3443342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 46940839 - 46940799
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 76  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  46940839 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtc 46940799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 54508475 - 54508411
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||||||| | ||| ||||||||||||||| ||||||| |||||| ||||||||    
T  54508475 aacctctggtgctagaaaatcaaaaatgtcaaaagcaaatgatataaaaacatgttaattgtcag 54508411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 39661398 - 39661441
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  39661398 ttgcccgcgtgctttctattcaagtgtaaataatggtttatata 39661441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 51234632 - 51234695
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||| || |||||||||  ||||||||||||||  ||||||||||||||||||||| ||||||    
T  51234632 aacctctgatgctagaaagtcgaaagtgtcaaaaataaatggtataaaagcatgttggttgtca 51234695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 49017986 - 49018040
Alignment:
Q  21 ggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    |||||||| ||||||||||||| ||||  ||||||||||||| ||||||||||||    
T  49017986 ggtgctaggaaaccgaaagtgtaaaaaaaaaatggtataaaaacatgttgattgt 49018040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 26276515 - 26276452
Alignment:
Q  85 agcttgttgcccgcttgcccgcttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    |||||||||||||||||||   ||  |||| |||||||||||||||||||||||||||  |||||||    
T  26276515 agcttgttgcccgcttgcc---ttcacttcaattcaagtgtaaataatggtttatatatatatatat 26276452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 38978883 - 38978827
Alignment:
Q  21 ggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    |||||||| ||||| |||||||||||| ||||| |||||||| ||| ||||||||||    
T  38978883 ggtgctaggaaaccaaaagtgtcaaaaacaaatagtataaaaacatattgattgtca 38978827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 38146072 - 38146135
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||| ||||||||| ||  | ||||||||||| | ||||||||||||| ||||||||||||||    
T  38146072 aacctctggtgctaggaagtcaaaagtgtcaaatgtaaatggtataaaaacatgttgattgtca 38146135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 44198657 - 44198618
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  44198657 ccgcttgccttctattcaagtgtaaataataatttatata 44198618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 7502103 - 7502041
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtat-aaaagcatgttgattgt 75  Q
    ||||| ||||||||| ||||| ||| ||||||||| ||||||||| |||| ||||||||||||    
T  7502103 aacctctggtgctaggaaaccaaaaatgtcaaaagaaaatggtataaaaaacatgttgattgt 7502041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 13582404 - 13582370
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatg 133  Q
    ||||||||||||||||||||||||| |||||||||    
T  13582404 ttgcccgcttgccttctattcaagtctaaataatg 13582370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 132
Target Start/End: Complemental strand, 49017857 - 49017828
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataat 132  Q
    ||||||||||||||||||||||||||||||    
T  49017857 ccgcttgccttctattcaagtgtaaataat 49017828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 4473083 - 4473135
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgat 72  Q
    ||||||||| || ||||||||||||||| ||||| |||||||| ||| |||||    
T  4473083 tggtgctaggaagccgaaagtgtcaaaaacaaatagtataaaaacatattgat 4473135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 21552558 - 21552506
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||||| || |||||||||||||||||||||||| | ||||||  |||||||    
T  21552558 ttgcccgtttaccttctattcaagtgtaaataatgatatatatatatatatat 21552506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 29169884 - 29169820
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29169884 aacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 29169820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 31737405 - 31737350
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  31737405 tgctagaaaatcgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcag 31737350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 19035469 - 19035527
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  19035469 tggtgctaggaaaccgtaagtgtcaaaagtaaatggtataaaagcatgttgattgtcag 19035527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 28041212 - 28041154
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  28041212 tggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacctgttgattgtcag 28041154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 45659733 - 45659675
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45659733 tggtgataggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 45659675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 21472897 - 21472846
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataattatata 150  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  21472897 ttgcccgcttgcattctattcaagtgtaaataatggtttatataaatatata 21472846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 21473025 - 21473083
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||    
T  21473025 tggtgctaggaaactgcaagtgtcaaaagcaaatggtataaaaacatgttgattgtcag 21473083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 7213137 - 7213096
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttata 140  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7213137 ttgcccgcttgccttctattcaagtgtaaataatggtttata 7213096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 22346922 - 22346975
Alignment:
Q  25 ctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22346922 ctaggaaaccgaaagtgtcaaaagcaaaaggtataaacgcatgttgattgtcag 22346975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 868614 - 868658
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataa 143  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  868614 ttgcccgcttgccttctattcaagtgtaaataattgtttatataa 868658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 1114081 - 1114125
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataa 143  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  1114081 ttgcccgcttggcttctattcaagtgtaaataatggtttatataa 1114125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 2898718 - 2898766
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaa 62  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  2898718 aacctctggtgctaggaaaccgaaagtatcaaaagcaaatggtataaaa 2898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 19035365 - 19035321
Alignment:
Q  107 ttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  19035365 ttgccttctattcaagtgtaaataatggtttatatatatatatat 19035321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 20259888 - 20259824
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||  |||||||||||||||| |  ||||||||||||| |||||||||||||||    
T  20259888 aacctctggtgctaagaaaccgaaagtgtcaacaataaatggtataaaaacatgttgattgtcag 20259824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 24177724 - 24177764
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttat 139  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  24177724 ttgcccgcttgtcttctattcaagtgtaaataatggtttat 24177764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 34644582 - 34644646
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| || |||||| || ||||||||||||||| |||||||||||||||||||| | |||||||    
T  34644582 aacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtaggttgtcag 34644646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 2764495 - 2764557
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 76  Q
    ||||| || |||||| || | |||||||||||||| |||||| ||||||||||||||||||||    
T  2764495 aacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtc 2764557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 4862074 - 4862016
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||| ||| |||||||||||||||||||| ||||||||| |||||| |||||||    
T  4862074 tggtgttaggaaatcgaaagtgtcaaaagcaaattgtataaaagtatgttgcttgtcag 4862016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 22346785 - 22346751
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggttt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  22346785 ccgcttgccttctattcaagtgtaaataatggttt 22346751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 24177593 - 24177540
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 76  Q
    |||||| ||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  24177593 tgctaggaaaccgaaactgtcaaaaacaaatggtataaaaatatgttgattgtc 24177540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 31737543 - 31737579
Alignment:
Q  107 ttgccttctattcaagtgtaaataatggtttatataa 143  Q
    |||||||||||||||||||||||||| ||||||||||    
T  31737543 ttgccttctattcaagtgtaaataattgtttatataa 31737579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 38731625 - 38731689
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||  || || ||||| |||||||||||| ||||||||| ||||||||||||||    
T  38731625 aacctctggtgctaagaagccaaaagtttcaaaagcaaattgtataaaagtatgttgattgtcag 38731689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 28041344 - 28041383
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  28041344 ccgcttgtcttctatttaagtgtaaataatggtttatata 28041383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 44270051 - 44270008
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||    
T  44270051 ttgcccgcttgtcttttattcaaatgtaaataatggtttatata 44270008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 45835398 - 45835441
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||| || | |||||||||||||||||||||||||||||||    
T  45835398 ttgcccgtttcctttctattcaagtgtaaataatggtttatata 45835441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 50314689 - 50314654
Alignment:
Q  40 tgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||||||| ||||||||||||||||||||||||||    
T  50314689 tgtcaaaagtaaatggtataaaagcatgttgattgt 50314654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 25375902 - 25375866
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgat 72  Q
    |||||||||| |||||||||||||||| |||||||||    
T  25375902 aaagtgtcaatagcaaatggtataaaaacatgttgat 25375866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 28493556 - 28493588
Alignment:
Q  111 cttctattcaagtgtaaataatggtttatataa 143  Q
    ||||||||||||||||||||||| |||||||||    
T  28493556 cttctattcaagtgtaaataatgatttatataa 28493588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 29170404 - 29170440
Alignment:
Q  106 cttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||||||||||||||||||||  ||||||||    
T  29170404 cttgccttctattcaagtgtaaataataatttatata 29170440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 103128 - 103186
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  103128 tggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 103186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 103000 - 102957
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  103000 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 102957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 4413151 - 4413093
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4413151 tggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 4413093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 41867993 - 41867935
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  41867993 tggtgctaggaacccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 41867935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 9685498 - 9685442
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  9685498 gtgctagaaaatcaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 9685442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 17344660 - 17344715
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  17344660 tggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 17344715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 20142816 - 20142753
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||| || |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  20142816 aacctttgatgctagaaaaccaaaagtgtcaaaagaaaatggtataaaagcatgttgattgtca 20142753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 18745039 - 18744981
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||    
T  18745039 tggtgctagaaaatcgaaaatgtcaaaagcaaatggtataaaagtatgttgattgtcag 18744981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 28225026 - 28225080
Alignment:
Q  24 gctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  28225026 gctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 28225080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 19161859 - 19161810
Alignment:
Q  29 aaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19161859 aaaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcag 19161810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 41868120 - 41868171
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataattatata 150  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  41868120 ttgcccgcttgctttctattcaagtgtaaataatggtttatataaatatata 41868171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 3208457 - 3208498
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttata 140  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3208457 ttgcccgcttgccttctattcaagtgtaaataatggtttata 3208498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 42122706 - 42122666
Alignment:
Q  104 cgcttgccttctattcaagtgtaaataatggtttatataat 144  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42122706 cgcttgccttctattcaagtgtaaataatggtttatataat 42122666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 34814893 - 34814846
Alignment:
Q  31 aaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  34814893 aaccgaaagtgtcgaaagcaaatggtataaaagcatattgattgtcag 34814846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 4413279 - 4413325
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataatt 145  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  4413279 ttgcccacttgccttctattcaagtgtaaataattgtttatataatt 4413325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 23485022 - 23484965
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||    
T  23485022 tggtgctaggaaacagaa-gtgtcaaaaacaaatggtataaaagcatgttgattgtcag 23484965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 1472386 - 1472337
Alignment:
Q  102 cccgcttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  1472386 cccgtttgccttctattcaagtgtaaataatggtttatatatatatatat 1472337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 2248533 - 2248492
Alignment:
Q  102 cccgcttgccttctattcaagtgtaaataatggtttatataa 143  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  2248533 cccgcttgccttctgttcaagtgtaaataatggtttatataa 2248492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 13413241 - 13413200
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatataat 144  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  13413241 ccgcttgtcttctattcaagtgtaaataatggtttatataat 13413200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 17344532 - 17344480
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||  |||||||    
T  17344532 ttgccggcttgccttctattcaagtgtaaataatgatttatatatatatatat 17344480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 18745167 - 18745210
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  18745167 ttgctcgcttgtcttctattcaagtgtaaataatggtttatata 18745210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 5532457 - 5532498
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  5532457 aaagtgtcaaaagtaaatagtataaaagcatgttgattgtca 5532498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 5536731 - 5536691
Alignment:
Q  111 cttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  5536731 cttctattcaagtgtaaataatggtttatatatatatatat 5536691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 20143166 - 20143210
Alignment:
Q  107 ttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||    
T  20143166 ttgccttctattcaaatgtaaataatggtttatatatatatatat 20143210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 2886829 - 2886872
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||| |||||  |||||||||||||||||||||||||||||||    
T  2886829 ttgcctgcttgtattctattcaagtgtaaataatggtttatata 2886872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 4849719 - 4849676
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||    
T  4849719 ttgcccacttaccttctattcaagtgtaaataatgatttatata 4849676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 15515368 - 15515403
Alignment:
Q  107 ttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||| |||||||||||||||||||||||||    
T  15515368 ttgccttctactcaagtgtaaataatggtttatata 15515403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 13147185 - 13147143
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaa 62  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||    
T  13147185 tggtgttagaaaaccaaaagtgtcaaaatcaaatggtataaaa 13147143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 32029156 - 32029115
Alignment:
Q  35 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 76  Q
    ||||||||||||| |||||| ||| |||||||||||||||||    
T  32029156 gaaagtgtcaaaaacaaatgatatgaaagcatgttgattgtc 32029115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 2886690 - 2886642
Alignment:
Q  30 aaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| | |||||| |||||| ||||||| |||||||||||||||    
T  2886690 aaaccgaaaatatcaaaaacaaatgatataaaaacatgttgattgtcag 2886642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 10579848 - 10579812
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgat 72  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  10579848 aaagtgtcaaacgcaaatggtataaaggcatgttgat 10579812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 34360400 - 34360368
Alignment:
Q  110 ccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||||||| |||||||||    
T  34360400 ccttctattcaagtgtaaataatagtttatata 34360368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 42921713 - 42921777
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42921713 aacctctggtgctaggaaaccgaaagtgtcataagcaaatggtataaaagcatgttgattgtcag 42921777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 13166992 - 13166937
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  13166992 tgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 13166937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 37873729 - 37873665
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| || || ||||||||||||||||||||||||||| |||||||||||||||    
T  37873729 aacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcag 37873665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 14423715 - 14423758
Alignment:
Q  35 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14423715 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 14423758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 430640 - 430682
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  430640 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 430682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 35310483 - 35310528
Alignment:
Q  33 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  35310483 ccgaaagtgtcaaaagcagatggtataaaagcatgttgattgtcag 35310528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 32269880 - 32269824
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  32269880 gtgctaggaaatcgaaagtatcaaaagcaaatggtataaaagcgtgttgattgtcag 32269824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 33692127 - 33692083
Alignment:
Q  33 ccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  33692127 ccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtca 33692083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 34335373 - 34335417
Alignment:
Q  34 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  34335373 cgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcag 34335417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 43129556 - 43129614
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||| ||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  43129556 tggtgttaggaaaccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtcag 43129614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 27336732 - 27336773
Alignment:
Q  37 aagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  27336732 aagtgtcaaaagcaaatggtataaaagtatgttgattgtcag 27336773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 14723335 - 14723271
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| || ||||| |||||| ||||||| |||| |||||| |||||||||||||||||||||||    
T  14723335 aacctctgatgctaaaaaaccaaaagtgtaaaaaacaaatgatataaaagcatgttgattgtcag 14723271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 15292238 - 15292281
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  15292238 ttgcccacttgccttctattcaagtataaataatggtttatata 15292281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 25663102 - 25663059
Alignment:
Q  35 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  25663102 gaaagtgtcaaaagcaaatggtataaaaacatgttgattatcag 25663059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 26212796 - 26212839
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  26212796 ttgcccgcttgctttctattcaagtgtaaataatgatttatata 26212839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 35455978 - 35456033
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||||||| || || ||| ||||||||||||| ||||||||||||||||||||||    
T  35455978 tggtgctaggaagccaaaattgtcaaaagcaaaaggtataaaagcatgttgattgt 35456033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 38875660 - 38875718
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| || | ||||||||||||| ||||||||| |||| |||||||||||||||    
T  38875660 tggtgctaggaagctgaaagtgtcaaaaacaaatggtacaaaaacatgttgattgtcag 38875718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 22188740 - 22188687
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgatt 73  Q
    |||||||| |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  22188740 tggtgctaaaaaatcgaaagtgtcaaaaacaaatagtataaaatcatgttgatt 22188687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 32230587 - 32230534
Alignment:
Q  25 ctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||| |||||||| || ||| ||||||||||||| |||||||||||||    
T  32230587 ctagaaaaccaaaagtgtcgaacgcagatggtataaaagcttgttgattgtcag 32230534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 42921585 - 42921540
Alignment:
Q  106 cttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||    
T  42921585 cttgccttctattcaagtgtaaataatgatttatatatatatatat 42921540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 3114238 - 3114190
Alignment:
Q  30 aaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| |||||||||||| |||||||||||||| |||||||| ||||||    
T  3114238 aaaccaaaagtgtcaaaaacaaatggtataaaaacatgttgactgtcag 3114190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 7716197 - 7716261
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaa-gcaaatggtataaaagcatgttgattgtca 77  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||| || ||| |||| |||||    
T  7716197 aacctctggtgctagaaaaccaaaagtgtcaaaacgcaaatggtatagaaacatattgaatgtca 7716261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 14423581 - 14423545
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttat 139  Q
    ||||||||||| |||||||||||||||||||||||||    
T  14423581 ccgcttgccttttattcaagtgtaaataatggtttat 14423545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 15292109 - 15292053
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||||  ||||||| |||| ||||| |||||||| |||||||||||||||    
T  15292109 gtgctagaaaactaaaagtgtaaaaaacaaattgtataaaaacatgttgattgtcag 15292053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 32270012 - 32270052
Alignment:
Q  102 cccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  32270012 cccgcttgccttctattcaagtgtaaataatattttatata 32270052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 41343529 - 41343473
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttg 70  Q
    ||||| ||||||||||||||||||  |||| ||| ||||||||||||||||| ||||    
T  41343529 aacctctggtgctagaaaaccgaatatgtcgaaaacaaatggtataaaagcacgttg 41343473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 43115525 - 43115485
Alignment:
Q  37 aagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  43115525 aagtgtcaaaagcaaatgctatgaaagcatgttgattgtca 43115485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 142
Target Start/End: Original strand, 15507566 - 15507597
Alignment:
Q  111 cttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||||||||||||||||    
T  15507566 cttctattcaagtgtaaataatggtttatata 15507597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 26212668 - 26212610
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||  |||| ||||| || |||| |||||||||||||||||||||||| |||||    
T  26212668 tggtgctaagaaactgaaagggtaaaaaacaaatggtataaaagcatgttgatcgtcag 26212610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 38875526 - 38875492
Alignment:
Q  110 ccttctattcaagtgtaaataatggtttatataat 144  Q
    |||||||||||||||||||||||| ||||||||||    
T  38875526 ccttctattcaagtgtaaataatgatttatataat 38875492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 9829421 - 9829380
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    |||||||||||   ||||||||||||||||||||||||||||    
T  9829421 aaagtgtcaaatataaatggtataaaagcatgttgattgtca 9829380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 18804507 - 18804454
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataattatatatt 152  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18804507 ttgcctgcttgccttctattcaagtgtaaataatggtttatataattatatatt 18804454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 38815316 - 38815374
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||    
T  38815316 tggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 38815374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 500136 - 500092
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataa 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  500136 ttgcccgcttgccttctattcaagtgtaaataatggtttatataa 500092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 3187985 - 3188049
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| || |||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  3187985 aacctctgatgctaggaagccgaaagtttcaaaagcaaatggtataaaagcatgttgattgtcag 3188049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 24125044 - 24125108
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||    
T  24125044 aacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtcag 24125108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 500254 - 500307
Alignment:
Q  25 ctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  500254 ctaggaaaccgaaaatgtcaaaagtaaatggtataaaagcatgttgattgtcag 500307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 22589549 - 22589592
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  22589549 ttgcccgcttgccttttattcaagtgtaaataatggtttatata 22589592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 24124918 - 24124880
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatat 141  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24124918 ccgcttgccttctattcaagtgtaaataatggtttatat 24124880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 35740071 - 35740013
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| |||| ||||||||||||||| ||| |||||||| |||||||||||||||    
T  35740071 tggtgctaggaaactgaaagtgtcaaaagctaattgtataaaaacatgttgattgtcag 35740013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 39434705 - 39434747
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  39434705 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcag 39434747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 6592591 - 6592652
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||| ||| ||||| |||| |||||||||||||||||||||| ||||| ||||||||||||    
T  6592591 aacctctggagctaggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgt 6592652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 18596818 - 18596855
Alignment:
Q  105 gcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18596818 gcttgccttctattcaagtgtaaataatggtttatata 18596855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 8882344 - 8882407
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| |||||||||||||| |||||| |||||| |||||||| ||||||||| |||||||||||    
T  8882344 aacctctggtgctagaaaactgaaagt-tcaaaaacaaatggtttaaaagcatattgattgtcag 8882407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 6618310 - 6618361
Alignment:
Q  24 gctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||| |||| |||||||||||||||||||||| ||||| ||||||||||||    
T  6618310 gctaggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgt 6618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 1187411 - 1187448
Alignment:
Q  105 gcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||||||||||||||||||||| |||||||||    
T  1187411 gcttgccttctattcaagtgtaaataattgtttatata 1187448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 25021905 - 25021844
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||| ||||||||| || || ||| ||||||||| ||||||||||||| ||||||||||||    
T  25021905 aacctctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgt 25021844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 37514258 - 37514298
Alignment:
Q  35 gaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  37514258 gaaagtgtcaaaagcaaatagtataaacgcatgttgattgt 37514298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 8619830 - 8619893
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||| ||||| |||||| || ||| ||| |||| ||||||||||||||||| |||||||||||    
T  8619830 aacctctggtgttagaaagccaaaaatgttaaaaacaaatggtataaaagcacgttgattgtca 8619893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 8115842 - 8115886
Alignment:
Q  29 aaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgatt 73  Q
    |||||| ||||||||||| |||||||||||||||| || ||||||    
T  8115842 aaaaccaaaagtgtcaaatgcaaatggtataaaagtatattgatt 8115886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 10189567 - 10189623
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||| || || ||| ||||||| ||||||| ||||||| |||||||||||||||    
T  10189567 gtgctaggaagccaaaaatgtcaaatgcaaatgatataaaaacatgttgattgtcag 10189623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 24451004 - 24450972
Alignment:
Q  111 cttctattcaagtgtaaataatggtttatataa 143  Q
    ||||||||||| |||||||||||||||||||||    
T  24451004 cttctattcaattgtaaataatggtttatataa 24450972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 4166013 - 4165949
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  4166013 aacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttgattgtcag 4165949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 33220793 - 33220739
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  33220793 tgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 33220739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 4206687 - 4206623
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||    
T  4206687 aacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcag 4206623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 17249387 - 17249332
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  17249387 tgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 17249332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 34304521 - 34304576
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  34304521 tgctaggaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 34304576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 45762 - 45704
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||  |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  45762 tggtgctaagaaaccgaaagtgtcaaaaacaaatggaataaaagcatgttgattgtcag 45704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 959596 - 959660
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| ||||||||| |||||||| |||||||||||||  |||||||||||||||    
T  959596 aacctctggtgctaggaaaccgaaaatgtcaaaaacaaatggtataaagacatgttgattgtcag 959660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 45834 - 45877
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  45834 ttgcccgcttgcctcctattcaagtgtaaataatggtttatata 45877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 34415458 - 34415516
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  34415458 tggtgttaggaaacctaaagtgtcaaaaacaaatggcataaaagcatgttgattgtcag 34415516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 29338147 - 29338109
Alignment:
Q  37 aagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29338147 aagtgtcaaaagcaaatggtataagagcatgttgattgt 29338109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 2135023 - 2135058
Alignment:
Q  105 gcttgccttctattcaagtgtaaataatggtttata 140  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2135023 gcttgccttctattcaattgtaaataatggtttata 2135058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 24016359 - 24016414
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||||||| ||||| ||| | |||| |||||||||||||||| ||||||||||||    
T  24016359 tggtgctaggaaaccaaaactatcaatagcaaatggtataaaaacatgttgattgt 24016414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 34562398 - 34562433
Alignment:
Q  107 ttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||||||||||||||||||| |||||||||    
T  34562398 ttgccttctattcaagtgtaaataatagtttatata 34562433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 34554362 - 34554304
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| || ||||| |||||||||| ||||||||||||| ||| |||||| ||||    
T  34554362 tggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcag 34554304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 34168913 - 34168946
Alignment:
Q  43 caaaagcaaatggtataaaagcatgttgattgtc 76  Q
    |||||||||||||||||||||||||||| |||||    
T  34168913 caaaagcaaatggtataaaagcatgttgcttgtc 34168946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 50483287 - 50483223
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  50483287 aacctctggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtcag 50483223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 30940945 - 30940988
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30940945 ttgcccgcttgccttctattcaagtgtaaataatggtttatata 30940988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 600783 - 600722
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  600783 aacctctggtgttaggaaaccgaaagtgacaaaagcaaatggtataaaagcatgttaattgt 600722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 16957569 - 16957622
Alignment:
Q  25 ctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||    
T  16957569 ctagaaaactgaaagtgtcaaaagcaaatggtatataagcatgttgattatcag 16957622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 30940822 - 30940766
Alignment:
Q  21 ggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  30940822 ggtgctaggaaatcgaaagtgtcaaaagcaa-tggtataaaagcatgttgattgtcag 30940766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 55933533 - 55933492
Alignment:
Q  34 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  55933533 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 55933492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 132417 - 132465
Alignment:
Q  30 aaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  132417 aaaccgaaagtgtaaaaaacaaatggtataaaagcatgttgattgtcag 132465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 40392771 - 40392811
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatataa 143  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40392771 ccgcttgccttctattcaagtgtaaataatggtttatataa 40392811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 56462197 - 56462133
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||||||| ||||| |||||||| ||| |||||||||||||| |||||||||||||||    
T  56462197 aacctctggtgctaggaaaccaaaagtgtctaaaacaaatggtataaaaacatgttgattgtcag 56462133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 3330021 - 3330076
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||| || || |||||||||||||||||| ||||||||||||||||||||||||    
T  3330021 tgctaggaagccaaaagtgtcaaaagcaaatagtataaaagcatgttgattgtcag 3330076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 53619624 - 53619666
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  53619624 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtcag 53619666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 34107781 - 34107728
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgatt 73  Q
    ||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||    
T  34107781 tggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaacatgttgatt 34107728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 50001008 - 50000952
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggta-taaaagcatgttgattgtcag 78  Q
    ||||||||| || |||||||||||||||||| ||| |||||||||||||||||||||    
T  50001008 tgctagaaagccaaaagtgtcaaaagcaaattgtattaaaagcatgttgattgtcag 50000952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 50463015 - 50462975
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 76  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  50463015 aaagtgtcaaaagcaaatggtatgaaagcatgttgattgtc 50462975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 600909 - 600948
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  600909 ccgcttgccttctattcaagtgtaaataattgtttatata 600948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 7536662 - 7536599
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||| ||||||||| |||| |||| |||||||| ||||| |||||||| ||||||||||||||    
T  7536662 aacctctggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaacatgttgattgtca 7536599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 16955350 - 16955311
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatata 142  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  16955350 ccgcttgccttctactcaagtgtaaataatggtttatata 16955311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 6865889 - 6865847
Alignment:
Q  36 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  6865889 aaagtgtcaaaagcaaatgatataaaagcatgttgatagtcag 6865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 11562926 - 11562976
Alignment:
Q  26 tagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 76  Q
    ||||||||||||| |||| |||| ||||| |||||||||||||||||||||    
T  11562926 tagaaaaccgaaaatgtctaaagtaaatgatataaaagcatgttgattgtc 11562976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 26521510 - 26521567
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||||||| ||||| |||||||  |||||| ||| ||||||||||||||||||||||    
T  26521510 tggtgctaggaaaccaaaagtgttgaaagcatatgatataaaagcatgttgattgtca 26521567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 53170401 - 53170364
Alignment:
Q  105 gcttgccttctattcaagtgtaaataatggtttatata 142  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  53170401 gcttgccttctattcaaatgtaaataatggtttatata 53170364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 31847112 - 31847167
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||| || || |||||||||||||||||||||| |||| |||||||| ||||||    
T  31847112 tgctaggaagccaaaagtgtcaaaagcaaatggtaaaaaaacatgttgactgtcag 31847167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 47585229 - 47585267
Alignment:
Q  107 ttgccttctattcaagtgtaaataatggtttatataatt 145  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  47585229 ttgccttctattcaaatgtaaataatagtttatataatt 47585267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 23255747 - 23255784
Alignment:
Q  41 gtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  23255747 gtcaaaaacaaatggtataaaagcatgttaattgtcag 23255784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 25504319 - 25504372
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||||| ||||| ||| ||||||||||||| ||||||||| ||||| ||||||    
T  25504319 gtgctaggaaaccaaaaatgtcaaaagcaaacggtataaaaacatgtcgattgt 25504372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 53170535 - 53170568
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaat 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  53170535 tggtgctagcaaaccgaaagtgtcaaaagcaaat 53170568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 12918443 - 12918399
Alignment:
Q  34 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||||||||| |||| |||||||||  |||||||||||||    
T  12918443 cgaaagtgtcaaaagtaaatagtataaaagtgtgttgattgtcag 12918399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 46440971 - 46440919
Alignment:
Q  23 tgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    |||||| || |||||||||||||||||||||| ||||||| | |||| |||||    
T  46440971 tgctaggaagccgaaagtgtcaaaagcaaatgatataaaaacgtgttaattgt 46440919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 48656981 - 48656941
Alignment:
Q  34 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattg 74  Q
    |||||||||||||| |||||||||||||| ||| |||||||    
T  48656981 cgaaagtgtcaaaaacaaatggtataaaaacattttgattg 48656941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 6356 - 6414
Alignment:
Q  20 tggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  6356 tggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcag 6414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 5218 - 5167
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataattatata 150  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  5218 ttgcccgcttgcattctattcaagtgtaaataatggtttatataaatatata 5167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 10376 - 10436
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattg 74  Q
    ||||| ||||||||| || ||  ||||||||||||||||||||||||||||||||||||||    
T  10376 aacctctggtgctaggaagccacaagtgtcaaaagcaaatggtataaaagcatgttgattg 10436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 33266 - 33330
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||| ||||| ||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  33266 aacctctggtgttaggaaaccgaaaatgtcaaaagtaaatggtataaaaacatgttgattgtcag 33330  T

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Target: scaffold0148; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 33144 - 33092
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataatggtttatataattatatat 151  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||  |||||||    
T  33144 ttgcctgcttgccttctattcaagtgtaaataatggtgtatatatatatatat 33092  T

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Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 49447 - 49491
Alignment:
Q  34 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  49447 cgaaagtgtcaaaagcaaatggtataaaagcacgttgattgtcag 49491  T

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Target: scaffold1768 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 275 - 212
Alignment:
Q  14 aacctgtggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtca 77  Q
    ||||| |||| |||||||||| |||||||||||  |||||||||||||||||||||||| ||||    
T  275 aacctttggtactagaaaaccaaaagtgtcaaacacaaatggtataaaagcatgttgatggtca 212  T

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Target: scaffold0493 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 8599 - 8543
Alignment:
Q  22 gtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 78  Q
    ||||||| ||||| ||||||| ||| ||||||||||||||| |||||||||||||||    
T  8599 gtgctaggaaaccaaaagtgttaaacgcaaatggtataaaaacatgttgattgtcag 8543  T

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Target: scaffold0470 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 7628 - 7679
Alignment:
Q  24 gctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 75  Q
    ||||| |||| |||||||||||||||||||||| ||||| ||||||||||||    
T  7628 gctaggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgt 7679  T

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Target: scaffold0075 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 13349 - 13304
Alignment:
Q  103 ccgcttgccttctattcaagtgtaaataatggtttatataattata 148  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||    
T  13349 ccgcttgctttctattcaaatgtaaataatggtttatataaatata 13304  T

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Target: scaffold0406 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 6782 - 6750
Alignment:
Q  99 ttgcccgcttgccttctattcaagtgtaaataa 131  Q
    |||||||||||||||||||||||||||||||||    
T  6782 ttgcccgcttgccttctattcaagtgtaaataa 6750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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