View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_35 (Length: 330)
Name: NF17215_low_35
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 46862202 - 46862506
Alignment:
| Q |
12 |
atgaatgccatgaaatatatgagagatgccccactgaataaataagaataggaaaatggtcaaaccaagtttcatccatcaatacaagattctggtcatg |
111 |
Q |
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| T |
46862202 |
atgaatgccatgaaatatatgagagatgccccactgaataaataagaataggaaaatggtcaaagcaagtttcatccatcaatacaagattctggtcatg |
46862301 |
T |
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| Q |
112 |
tatttattgtgattttaattattggcttat-aaaaaatatatagccgaaattactaaacagttacacagaaccaataatgtctaagaggatcttggatta |
210 |
Q |
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| T |
46862302 |
tatttattgtgattttaattattggcttataaaaaaatatatagccgaaattactatacagttacacagaaccaataatgtctaagaggatcttggatta |
46862401 |
T |
|
| Q |
211 |
tgttctgaattcgacgaagctattggttcaataaatgtctaattgtcagtgaaatgatgtgccatagaaaattatgtgaaaaaacaaaccgaagtatctt |
310 |
Q |
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| T |
46862402 |
tgttctgaattcgacgaagctattggttcaataaatgtctaattgtcagtgaaatgatgtgccat-gaaaattatgtgaaaaaacaaaccgaagtatctt |
46862500 |
T |
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| Q |
311 |
gaaact |
316 |
Q |
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|||||| |
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| T |
46862501 |
gaaact |
46862506 |
T |
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