View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_36 (Length: 323)
Name: NF17215_low_36
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 45303255 - 45303560
Alignment:
| Q |
1 |
atcacaccattctcattatttctttctctctctaatgtagatgagttttgatgtcgaaaaattattttgcgtaaactaaatcaaagtgaaatatatatca |
100 |
Q |
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| T |
45303255 |
atcacaccactctcattatttctttctctctctaatgcagatgagttttgatgtcgaaaaattattttgcgtaaactaaatcaaagtgaaatat----ca |
45303350 |
T |
|
| Q |
101 |
tcacaattcataactattatccagccacacacatatggttgacaatgtaaattaaacaatcatgcattagggcacgtaagaagatctatctggagttggc |
200 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303351 |
tcacaattcatagctattatcca----cacacatatggttgacaatgtaaattaaacaatcatgcattagggcacgtaagaagatctatctggagttggc |
45303446 |
T |
|
| Q |
201 |
caaactgtcttggtgtacttggacagacattccaataatttagccaaa-tttatattccgtcaaattcgagatttcgaggattagctagtggtacggaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45303447 |
caaactgtcttggtgtacttggacagacattccaataatttagccaaattttctattccgtcaaattcgagatttcgaggattagctagtagtacggaat |
45303546 |
T |
|
| Q |
300 |
tggtcaattttcat |
313 |
Q |
| |
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|||||||||||||| |
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| T |
45303547 |
tggtcaattttcat |
45303560 |
T |
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