View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_46 (Length: 249)
Name: NF17215_low_46
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_46 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 23477 - 23241
Alignment:
| Q |
1 |
acataactgcaatgctgatgaggctcttgaggtttgaaatttgaaagggattctagcatatgaacaatgttatccttccaacatgtccaacaataaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23477 |
acataactgcaatgctgatgaggctcttgaggtttgaaatttgaaagggattctagcatatgaacaatgttatccttccaacatgtccaacaataaaaca |
23378 |
T |
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| Q |
101 |
atgtctccacggaaaaatgatttttcaaaatcatgccttcaacagaaacatctaacatattgtcttgccatacatacttagaggtgttcatacgaaaatg |
200 |
Q |
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| T |
23377 |
atgtctccacggaaaaatgatttttcaaaatcatgccttcaacagaaacatctaacatattgtcttgccatacatacttagaggtgttcatacgaaaatg |
23278 |
T |
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| Q |
201 |
agaatccagcagtttcctcaaacataatattccccct |
237 |
Q |
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| T |
23277 |
agaatccagcagtttcctcaaacataatatttcccct |
23241 |
T |
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Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34602063 - 34602299
Alignment:
| Q |
1 |
acataactgcaatgctgatgaggctcttgaggtttgaaatttgaaagggattctagcatatgaacaatgttatccttccaacatgtccaacaataaaaca |
100 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
34602063 |
acataactgctatgctgatgaggctcttgaactttgaaatttgaaagggattctagcatatgaacaatgttatccttccaacatgttcaactataaaaca |
34602162 |
T |
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| Q |
101 |
atgtctccacggaaaaatgatttttcaaaatcatgccttcaacagaaacatctaacatattgtcttgccatacatacttagaggtgttcatacgaaaatg |
200 |
Q |
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| T |
34602163 |
atgtctccacggaaaattgattcttcataatcatgccttcgacagaaacatcaaacaagctgtcttgccagacatacttagaggagtttagccgaaaatg |
34602262 |
T |
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| Q |
201 |
agaatccagcagtttcctcaaacataatattccccct |
237 |
Q |
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| T |
34602263 |
agaatccagcagtttccacaaacataatatttcccct |
34602299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 237
Target Start/End: Complemental strand, 28398500 - 28398350
Alignment:
| Q |
87 |
ccaacaataaaacaatgtctccacggaaaaatgatttttcaaaatcatgccttcaacagaaacatctaacatattgtcttgccatacatacttagaggtg |
186 |
Q |
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||||||| ||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||||| |||||||||| |||||||| |||| | |
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| T |
28398500 |
ccaacaacaaaacaatgtctccacggaaagttgattcttcataatcatgccttcgacagaaacatcaaacatactgtcttgccagacatactttgaggag |
28398401 |
T |
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| Q |
187 |
ttcatacgaaaatgagaatccagcagtttcctcaaacataatattccccct |
237 |
Q |
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|| | |||||||||||||||||||||| || ||||||||||||| ||||| |
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| T |
28398400 |
tttaaccgaaaatgagaatccagcagttcccacaaacataatatttcccct |
28398350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 28403119 - 28403028
Alignment:
| Q |
1 |
acataactgcaatgctgatgaggctcttgaggtttgaaatttgaaagggattctagcatatgaacaatgttatccttccaacatgtccaaca |
92 |
Q |
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|||||||||| |||||||||| ||||||||| |||||||||||||| | ||| || ||||||||||||||||||||||||||||||||||| |
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| T |
28403119 |
acataactgctatgctgatgaagctcttgagttttgaaatttgaaaagagttccagaatatgaacaatgttatccttccaacatgtccaaca |
28403028 |
T |
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