View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17215_low_7 (Length: 637)
Name: NF17215_low_7
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 2 - 614
Target Start/End: Original strand, 32809348 - 32809963
Alignment:
| Q |
2 |
ttaagggtttgtttgtgagtaagggaatgagtgaaagaaaactggaaatg------agtgagagtttacaagtttgagatgtaagaagtggaataaataa |
95 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
32809348 |
ttaaggttttgtttgtgagtaagggaatgagtgaaagaaaactggaagtggaagtgagtgagaggtta--agtttgagatgtaagaagtggaataaataa |
32809445 |
T |
|
| Q |
96 |
gtgaagtgggtgggttgtgttataataacattgaatgtcaccaccaaacaaaataacattgaatgcataaaattaagaagagtaaagaatgcattattta |
195 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
32809446 |
gtgaagtgggtgggttgtgtttaaataacattgaatgtcaccaccaaacaaaataacattgaatgcataaaattaagaagagtaaagaatgcactactta |
32809545 |
T |
|
| Q |
196 |
tcaacaagatgattggtccaagtggtaaagggcatgaaccttttaaatatgtgatcaagatcgattcatgtatgnnnnnnnttgatggaaagtgatgata |
295 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||| |||||| |||| ||||||| |
|
|
| T |
32809546 |
tcaacaagctgatttgtccaagtggtaaaggacatgaaccttttaaatatgtaatcaagatcaattcaggtatgaaaaaaattgatgaaaagagatgata |
32809645 |
T |
|
| Q |
296 |
tactttctgcaccttacaagtgttttaaacggagattagtcattactaaatgagacggaaatttttgtactaatattatgtgcaacnnnnnnnntgcact |
395 |
Q |
| |
|
|||||| ||| ||||||| || |||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
32809646 |
tactttgtgcgccttacatgttttttgaacggagattagtcattattaaatgagacggaaacttccgtactaatattatgtgcaac-aaaaaaatgcact |
32809744 |
T |
|
| Q |
396 |
actttatgcagcaaac---acat-------gcccctcgaaaaatcaaatatcaccataactttaaagtacatgacattagcaatagaccacattcatcca |
485 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||| ||| ||||||||| ||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
32809745 |
actttatgcagcaaacgtgacatctctcacgcccctcgaaaaatcaaacatcgccataacttcaaagtacatgacattagaaatataccacatccatcca |
32809844 |
T |
|
| Q |
486 |
actgcccacaagctcactcgaatcacaaaacaacatgaggcaaagcaaatgcttatgatctataaacaaaatggctactaaaatttctaaataacttgct |
585 |
Q |
| |
|
|| | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32809845 |
ac-ggccacaagttcactcgaatcgcaaaacaacatgaggcaaagcaaatgcttatgatctataaacaaaatggcta---------ctaaataacttgct |
32809934 |
T |
|
| Q |
586 |
actgaaagataaagtagaattaaactaag |
614 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
32809935 |
actaaaagataaagtagaattaaactaag |
32809963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 32269294 - 32269506
Alignment:
| Q |
9 |
tttgtttgtgagtaagggaatgagtgaaagaaaactggaaatgagtgagagtttacaagtttgagatgtaagaagtggaataaataagtgaagtgggtgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||| ||||||||||||| ||||||||| | ||| |
|
|
| T |
32269294 |
tttgtttgtgagtaagggaatgagtgaaagaaaattggaagtgagtgcaaggttacaagtttgagatgaaagaagtggaatatataagtgaaatttatgg |
32269393 |
T |
|
| Q |
109 |
gttgtgttataataacattgaatgtcaccaccaaacaaaataacattgaatgcataaaattaagaagagtaaagaatgcattatttatcaacaagatgat |
208 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||| ||||| |
|
|
| T |
32269394 |
gttttgtttaaataacattgaatgtcaccaccaaacaaaataacattgaatgcataaaattaagaaagttaaagattgcattgcttaccaaca--atgat |
32269491 |
T |
|
| Q |
209 |
tggtccaagtggtaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32269492 |
tggtccaagtggtaa |
32269506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 550
Target Start/End: Original strand, 32269863 - 32269907
Alignment:
| Q |
506 |
aatcacaaaacaacatgaggcaaagcaaatgcttatgatctataa |
550 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
32269863 |
aatcacaaaacaatatgaagcaatgcaaatgcttatgatctataa |
32269907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University