View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_9 (Length: 619)
Name: NF17215_low_9
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 6993320 - 6993849
Alignment:
| Q |
16 |
cagaagcattgaaagactccaatagtgtgaaatttgcaagagcatcaacttcaaaacttgggttaagacgacctttgtgggttctattcaacccagccac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993320 |
cagaagcattgaaagactccaatagtgtgaaatttgcaagagcatcaacttcaaaactcgggttaagacgacctttgtgggttctattcaacccagccac |
6993419 |
T |
|
| Q |
116 |
tttgataccaacaacttgatcgttccggcactcaacaccggtccagttccgacatggatcagnnnnnnnaggccactccttcccccttatccccatcgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6993420 |
tttgataccaacaacttgatcgttccggcactcaacaccggtccagttccgacatggatcagtttttttaggccactccttcccccttatccccatcgat |
6993519 |
T |
|
| Q |
216 |
gaacgaagctccaataacgctgaccattcagttcttgaactcaaactcactgttaactctactaacaaaaacaataccataacaacactcactattattc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6993520 |
gaacgaagctccaataacgctgaccattcagttcttgaactcaaactcactgttaactctactaacaaaaacaataccataacaacactcactgttattc |
6993619 |
T |
|
| Q |
316 |
cactcttcattttcatttccaactctaacaaacttcacttcacttcactctgctctttgcaatctcagcttcatctgcatgtaataatataacaaattca |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993620 |
cactcttcattttcatttccaactctaacaaacttcacttcacttcactctgctctttgcaatctcagcttcatctgcatgtaataatataacaaattca |
6993719 |
T |
|
| Q |
416 |
gcatatatcccnnnnnnnnnnnnnnnaattgttttaatataaaaaacgtacctttaattatgacaagttgttaaacttcactctgactcggtctataaga |
515 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993720 |
gcatatatccc----agagagaaaaaaattgttttaatataaaaaacgtacctttaattatgacaagttgttaaacttcactctgactcggtctataaga |
6993815 |
T |
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| Q |
516 |
aggaaccattaacgttgtaaactacaagaatgtc |
549 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6993816 |
aggaaccattaacgttgtaaactacaagaatgtc |
6993849 |
T |
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