View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_high_14 (Length: 514)
Name: NF17216_high_14
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Original strand, 47037765 - 47038253
Alignment:
| Q |
9 |
gaagaaaatatcaatcaacaaaatatggttattttgattcaattatctatgtccagccctgttacaaattccaaacaccatattcatgaaacgcattatt |
108 |
Q |
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| T |
47037765 |
gaagaaaatatcaatcaacaaaatatggttattttgattcaattatctatgtccagccctgttacaaattccaaacaccatattcatgaaacgcattatt |
47037864 |
T |
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| Q |
109 |
cactgatttaaataaagagtaattcttcatcttaattaaaagtaggttacattatttatgacaattgacaagggtctacagtattatctattttttcatg |
208 |
Q |
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| T |
47037865 |
cactgatttaaataaagagtaatttttcatcttaattaaaagtaggttacattatttatgacaattgacaagggtctacagtattatctattttttcatg |
47037964 |
T |
|
| Q |
209 |
tatcctctgttaacaattctaacaaacaggacgaaaaaagagtaagaaaagttgcaatttccatcatcataacaaaatattgggttgattaatagatgat |
308 |
Q |
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| T |
47037965 |
tatcctctgttaacaattctaacaaacaggacgaaaaaagagtaagaaaagttgcaatttccatcatcataacaaaatattgggttgattaatagatgat |
47038064 |
T |
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| Q |
309 |
ggatattaaagattacagagagaaactaagtatcatatcaataatattaaacctctaagtgaaaaagcattaataatcttcaggttctggaaacttgttc |
408 |
Q |
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| T |
47038065 |
ggatattaaagattacagagagaaactaagtatcatatcaataatattaaacctctaagtgaaaaagcattaataatcttcaggttctggaaacttgttc |
47038164 |
T |
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| Q |
409 |
aaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttcaagagccgcttgaagagcatcaactctagcacc |
497 |
Q |
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| T |
47038165 |
aaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttgaagagccgcttgaagagcatcaactctagcacc |
47038253 |
T |
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