View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_high_16 (Length: 449)
Name: NF17216_high_16
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 46939886 - 46939484
Alignment:
| Q |
18 |
agaatcaattaaaggaggatatgtagaaggaagaaattcagtgtcttgcatagaagcatcatcatcaccagcaataaaaagaggaatcatagttgaagaa |
117 |
Q |
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| T |
46939886 |
agaatcaattaaaggaggatatgtagaaggaagaaattcagtgtcttgcatagaagcatcatcatcaccagcaataaaaagaggaatcatagttgaagaa |
46939787 |
T |
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| Q |
118 |
ggaagaaaatcagtgtcttatgttgatgaaacaaagttagcagcagaagaaaaggtaggtaaatttgttgaggcaagaaaatcagtgtcccatattgaaa |
217 |
Q |
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| T |
46939786 |
ggaagaaaatcagtgtcttatgttgatgaaacaaagttagcagcagaagaaaaggtaggtaaatttgttgaggcaagaaaatcagtgtcccatattgaaa |
46939687 |
T |
|
| Q |
218 |
cattgtcttctgttattgaaaaacttcaagtgaaggttttggtctcagacatgccaagtttcatgcaagtgcatgcttttcgttgtgcaagaaggacata |
317 |
Q |
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| T |
46939686 |
cattgtcttctgttattgaaaaacttcaagtgaaggttttggtctcagacatgccaagtttcatgcaagtgcatgcttttcgttgtgcaagaaggacata |
46939587 |
T |
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| Q |
318 |
tgatagtcttgaggagtttagctccaaacacattgctcataacattaagaaggtatatgctaattatgctttaattttcacatctctatttatatattaa |
417 |
Q |
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| T |
46939586 |
tgatagtcttgaggagtttagctccaaacacattgctcataacattaagaaggtatatgctaattatgctttaattttcacatctctatttatatattta |
46939487 |
T |
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| Q |
418 |
tta |
420 |
Q |
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| T |
46939486 |
tta |
46939484 |
T |
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