View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17216_high_21 (Length: 412)

Name: NF17216_high_21
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17216_high_21
NF17216_high_21
[»] chr2 (4 HSPs)
chr2 (41-301)||(34010465-34010726)
chr2 (141-214)||(10251190-10251263)
chr2 (325-385)||(34011327-34011388)
chr2 (155-216)||(32628621-32628681)
[»] chr7 (1 HSPs)
chr7 (144-249)||(44614297-44614402)
[»] chr3 (2 HSPs)
chr3 (42-125)||(7177201-7177284)
chr3 (156-263)||(40063503-40063611)
[»] chr4 (3 HSPs)
chr4 (150-247)||(28701507-28701604)
chr4 (146-220)||(15527758-15527831)
chr4 (58-94)||(9111441-9111477)
[»] chr6 (3 HSPs)
chr6 (144-206)||(31533164-31533226)
chr6 (141-206)||(20397480-20397545)
chr6 (42-125)||(10262060-10262143)
[»] chr8 (1 HSPs)
chr8 (144-208)||(38153421-38153485)
[»] chr5 (3 HSPs)
chr5 (144-262)||(15507430-15507546)
chr5 (149-208)||(33903371-33903430)
chr5 (144-258)||(11877080-11877193)
[»] chr1 (5 HSPs)
chr1 (44-96)||(29202447-29202499)
chr1 (44-125)||(43845980-43846061)
chr1 (153-216)||(47939299-47939360)
chr1 (144-189)||(1094247-1094292)
chr1 (144-172)||(24491024-24491052)
[»] scaffold0032 (1 HSPs)
scaffold0032 (141-250)||(40795-40904)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 41 - 301
Target Start/End: Original strand, 34010465 - 34010726
Alignment:
Q  41 attatgaaacagtaatcaaataagattgaaatctaagggatagtattgtgccatgttattccagaagatgtcgtgattttccattcaccatagcattacg 140  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  34010465 attatgaaacagtaatcaaataagattaaaatctaagcgatagtattgtgccatgttattctggaagatgtcgtgattttccattcgccatagcattacg 34010564  T
Q  141 tttataagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaata-ttgttttccattaagggtctgtttttaata 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||| ||||||||||||    
T  34010565 tttataagaatgactattttttatgttatttacaacttaagtagatgataactattgctttaaaaaatatttttttttcattaagggcctgtttttaata 34010664  T
Q  240 tttgaacatgagcttcaattttatagaaacggctatgacattaacaacaaactttcttcgtt 301  Q
    |||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||    
T  34010665 tttgaaaatgacctccaattttatagaaacggctatgacatgaacaacaaactttcttcgtt 34010726  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 10251190 - 10251263
Alignment:
Q  141 tttataagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaatattgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||| || ||||||| |||||    
T  10251190 tttataagaatgactattttttatgttatttacaacttaaacagatgattactattgcttaaaaaaatcttgtt 10251263  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 34011327 - 34011388
Alignment:
Q  325 gaaacttcagattatgaatcgtgcacaacttaaaaacgataattaat-ttaagacgaaggga 385  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  34011327 gaaacttcagattatgaatcgtgcacaacttaaaaacgacaattaatcttaagacgaaggga 34011388  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 32628681 - 32628621
Alignment:
Q  155 tattttttatgttatttacaacttaagtagatgataactattgatttaaaaaatattgtttt 216  Q
    |||||||||||||||||||||||||| |||| ||| |||||||  |||||||||||||||||    
T  32628681 tattttttatgttatttacaacttaaatagacgattactattg-cttaaaaaatattgtttt 32628621  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 44614297 - 44614402
Alignment:
Q  144 ataagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaatattgttttccattaagggtctgtttttaatatttg 243  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| ||||||| || ||||||| ||||||| |  || ||| |  |||||||||||||    
T  44614297 ataagaatgacttttttttatgttatttacaacttaaatagatgattactattgcttaaaaaaatcttgtttttccataggggcccatttttaatatttg 44614396  T
Q  244 aacatg 249  Q
    ||||||    
T  44614397 aacatg 44614402  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 7177284 - 7177201
Alignment:
Q  42 ttatgaaacagtaatcaaataagattgaaatctaagggatagtattgtgccatgttattccagaagatgtcgtgattttccatt 125  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||  | |||||||| ||||    
T  7177284 ttatgaaacggtaatcaaataagattgaaatccaagggatagtattgtgctatgtcattccagaagaaattgtgattttacatt 7177201  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 40063611 - 40063503
Alignment:
Q  156 attttttatgttatttacaacttaagtagatgataactattgatt-taaaaaatattg-ttttccattaagggtctgtttttaatatttgaacatgagct 253  Q
    ||||||||||||||||| ||||||| |||||||| |  |||| ||  ||||||| ||| |||| |||| ||||||| ||| |||||||||||||||| ||    
T  40063611 attttttatgttatttataacttaaatagatgattataattgcttaaaaaaaatcttgttttttcattgagggtct-tttctaatatttgaacatgacct 40063513  T
Q  254 tcaattttat 263  Q
     | |||||||    
T  40063512 ccgattttat 40063503  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 28701507 - 28701604
Alignment:
Q  150 atgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaatattg-ttttccattaagggtctgtttttaatatttgaaca 247  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||||| ||| |||||||||   |||| ||||| ||||||||||||    
T  28701507 atgactattttttatgttatttacaacttaaatagatgattactattg-cttaaaaaatcttgtttttccattgcaggtccgttttaaatatttgaaca 28701604  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 15527758 - 15527831
Alignment:
Q  146 aagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaatattgttttccat 220  Q
    ||||||||||||||||||| ||||||||||| ||| ||||| || ||||||   |||||||| ||||||||||||    
T  15527758 aagaatgactattttttattttatttacaacataaatagattattactatt-ccttaaaaaaaattgttttccat 15527831  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 9111441 - 9111477
Alignment:
Q  58 aaataagattgaaatctaagggatagtattgtgccat 94  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  9111441 aaataagattgaaatctaaggaataatattgtgccat 9111477  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 31533226 - 31533164
Alignment:
Q  144 ataagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaa 206  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||    
T  31533226 ataagaatggctattttttatgttattcacaacttaaatagatgattactattgctttaaaaa 31533164  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 20397480 - 20397545
Alignment:
Q  141 tttataagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaa 206  Q
    ||||||| |||||||||||||||||||||||| ||||||| ||||| || ||||||| || |||||    
T  20397480 tttataaaaatgactattttttatgttatttaaaacttaaatagataattactattgcttaaaaaa 20397545  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 10262060 - 10262143
Alignment:
Q  42 ttatgaaacagtaatcaaataagattgaaatctaagggatagtattgtgccatgttattccagaagatgtcgtgattttccatt 125  Q
    |||||||||||||||||| ||||| ||| ||| || ||||||||||||||||||| |||  ||||||  || ||||||| ||||    
T  10262060 ttatgaaacagtaatcaagtaagactgatatccaatggatagtattgtgccatgtcattttagaagaaatcatgattttacatt 10262143  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 38153485 - 38153421
Alignment:
Q  144 ataagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaat 208  Q
    ||||||||||||||||||||||||||||||| ||||| || ||||| ||||||| || |||||||    
T  38153485 ataagaatgactattttttatgttatttacaccttaaataaatgattactattgcttaaaaaaat 38153421  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 15507430 - 15507546
Alignment:
Q  144 ataagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaatattgttttc-cattaagggtctgtttttaatattt 242  Q
    |||| ||||||||||||| |||||||||||  ||||| |||||||| ||||||| |||||||||| |||||||  |||  |||| || ||||||||||||    
T  15507430 ataaaaatgactatttttgatgttatttacgccttaaatagatgattactattg-tttaaaaaatcttgttttttcat--aggggctatttttaatattt 15507526  T
Q  243 gaacatgagcttcaatttta 262  Q
    |||||||  || ||||||||    
T  15507527 gaacatggcctccaatttta 15507546  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 33903371 - 33903430
Alignment:
Q  149 aatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaat 208  Q
    ||||||||| |||||||||||||| ||||||| |||||||| ||||||| || |||||||    
T  33903371 aatgactatgttttatgttatttaaaacttaaatagatgattactattgcttaaaaaaat 33903430  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 11877080 - 11877193
Alignment:
Q  144 ataagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaatattgttttccattaagggtctgtttttaatatttg 243  Q
    ||||||||||||||||||||| | ||||| ||||||| |||||||| | |||||  ||||||||| |||||||    |||  | |  ||||| |||||||    
T  11877080 ataagaatgactattttttatttaatttataacttaaatagatgattattattg-cttaaaaaatcttgttttttcataattgcccattttttatatttg 11877178  T
Q  244 aacatgagcttcaat 258  Q
    |||||||||||||||    
T  11877179 aacatgagcttcaat 11877193  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 29202447 - 29202499
Alignment:
Q  44 atgaaacagtaatcaaataagattgaaatctaagggatagtattgtgccatgt 96  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||    
T  29202447 atgaaacggtaatcaaataagactgaaatctaagggatagtattctgccatgt 29202499  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 43845980 - 43846061
Alignment:
Q  44 atgaaacagtaatcaaataagattgaaatctaagggatagtattgtgccatgttattccagaagatgtcgtgattttccatt 125  Q
    |||||||| ||||||||||| ||  |||||||||||||||||||||||||| | |||| ||||||   ||| ||||||||||    
T  43845980 atgaaacaataatcaaataaaatataaatctaagggatagtattgtgccatatcattctagaagaaaccgtaattttccatt 43846061  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 47939299 - 47939360
Alignment:
Q  153 actattttttatgttatttacaacttaagtagatgataactattgatttaaaaaatattgtttt 216  Q
    |||||||||||||||||||||||||||| |||||||| |||||||  ||||||||| |||||||    
T  47939299 actattttttatgttatttacaacttaa-tagatgattactattg-cttaaaaaatcttgtttt 47939360  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 1094292 - 1094247
Alignment:
Q  144 ataagaatgactattttttatgttatttacaacttaagtagatgat 189  Q
    ||||||||||  |||||||||||||||||||||| || ||||||||    
T  1094292 ataagaatgatcattttttatgttatttacaactaaaatagatgat 1094247  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 24491052 - 24491024
Alignment:
Q  144 ataagaatgactattttttatgttattta 172  Q
    |||||||||||||||||||||||||||||    
T  24491052 ataagaatgactattttttatgttattta 24491024  T

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Target: scaffold0032 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 40795 - 40904
Alignment:
Q  141 tttataagaatgactattttttatgttatttacaacttaagtagatgataactattgatttaaaaaatattg-ttttccattaagggtctgtttttaata 239  Q
    ||||||||| ||||||||||| |||||||||| ||||||| |||| ||| ||||||  || ||||||| | | |||| ||||| || || ||||||| ||    
T  40795 tttataagattgactatttttgatgttatttaaaacttaaatagaagattactattacttaaaaaaatctagttttttcattatggctc-gtttttagta 40893  T
Q  240 tttgaacatga 250  Q
    |||||||||||    
T  40894 tttgaacatga 40904  T

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