View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_high_27 (Length: 348)
Name: NF17216_high_27
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 83 - 336
Target Start/End: Complemental strand, 8909158 - 8908905
Alignment:
| Q |
83 |
aaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgacaagccatgactctatccatagtaccaataagtttaccaccaat |
182 |
Q |
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| T |
8909158 |
aaagccaaagagcaccagcttgtttgagaagaggaacaagagaaccattaatatgacaagccatgactctatccatagtaccaataagtttaccaccaat |
8909059 |
T |
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| Q |
183 |
gaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctctttcaagttctttgcctcttggatcttcatcaagttcatgaacagctgga |
282 |
Q |
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| T |
8909058 |
gaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctctttcaagttctttgcctcttggatcttcatcaagttcatgaacagctgga |
8908959 |
T |
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| Q |
283 |
ttcactcccattccacagaacaatctcttgatagcatgacacatgcaacaagtg |
336 |
Q |
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| T |
8908958 |
ttcactcccattccacagaacaatctcttgatagcatgacacatgcaacaagtg |
8908905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 7300448 - 7300123
Alignment:
| Q |
1 |
actataattatctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccag |
100 |
Q |
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| T |
7300448 |
actacaattatctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccag |
7300349 |
T |
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| Q |
101 |
catctttgagaagaggaacaagagaaccattaatatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaac |
200 |
Q |
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| T |
7300348 |
catctttgagaagaggaacaagagaaccattaatatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaaccggaagtga |
7300249 |
T |
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| Q |
201 |
atttgaagtaccaagaagtctcataagtgctctttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacag |
300 |
Q |
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| T |
7300248 |
tgttgaatttccaagtaacctcatcaatactcttttcatttctttccctttaggatcttcatcaacttcatgaaccattgcattcactcccattccacag |
7300149 |
T |
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| Q |
301 |
aacaatctcttgatagcatgacacat |
326 |
Q |
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| T |
7300148 |
aacaaactcttcattgcatgacacat |
7300123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 33 - 333
Target Start/End: Original strand, 7333261 - 7333559
Alignment:
| Q |
33 |
gctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccatta |
132 |
Q |
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| T |
7333261 |
gctacatttactgcaagtaagtgcttatgatcactaatcat--attaattaaagccataaagcaccagcatctttgagaagtggaacaagagaaccatta |
7333358 |
T |
|
| Q |
133 |
atatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctc |
232 |
Q |
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| T |
7333359 |
atatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatgctc |
7333458 |
T |
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| Q |
233 |
tttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgcaaca |
332 |
Q |
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| T |
7333459 |
ttttcatttgtttccctttaggatcttcatcaacttcatgaaccattgcattcactcccattccacagaacaaactcttcattgcatggcacatacaaca |
7333558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 326
Target Start/End: Original strand, 7340093 - 7340341
Alignment:
| Q |
78 |
taattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgacaagccatgactctatccatagtaccaataagtttacca |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||| |||||| ||||||||||||| ||||| | ||| ||| |
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| T |
7340093 |
taattaaagccataaagcaccagcatctttgagaagaggaataagtgaactattgatatgaaaagccaaaactctatccatagaaccaactaatttccca |
7340192 |
T |
|
| Q |
178 |
ccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctctttcaagttctttgcctcttggatcttcatcaagttcatgaacag |
277 |
Q |
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| T |
7340193 |
ccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatgctcttttcatttctttccctttaggatcttcatcaacttcatgaacca |
7340292 |
T |
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| Q |
278 |
ctggattcactcccattccacagaacaatctcttgatagcatgacacat |
326 |
Q |
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| T |
7340293 |
ttgcattcactcccataccacagaacaaactcttcattgcatgacacat |
7340341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 7376227 - 7376322
Alignment:
| Q |
50 |
tcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgacaagcca |
145 |
Q |
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| T |
7376227 |
tcagtgcttatgatcagtaatgagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccgttaatatgaaaagcca |
7376322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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