View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17216_high_3 (Length: 974)

Name: NF17216_high_3
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17216_high_3
NF17216_high_3
[»] chr5 (1 HSPs)
chr5 (27-955)||(5493225-5494153)


Alignment Details
Target: chr5 (Bit Score: 905; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 905; E-Value: 0
Query Start/End: Original strand, 27 - 955
Target Start/End: Complemental strand, 5494153 - 5493225
Alignment:
Q  27 aaccttcctccgacaacattccattcttccatgaatatccagacgcaccaccgtcgaatcagaatcaagcagcaccgttaacttctaacgccacaacagc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5494153 aaccttcctccgacaacattccattcttccatgaatatccagacgcaccaccgtcgaatcagaatcaagcagcaccgttaacttctaacgccacaacagc 5494054  T
Q  127 gaatccaacggcaacacaacctgcaaaaggaacaaagaaagtagcaatagcaatctccgttggaatcgtaacgttaggaatgttgtcggcgttagctttc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5494053 gaatccaacggcaacacaacctgcaaaaggaacaaagaaagtagcaatagcaatctccgttggaatcgtaacgttaggaatgttgtcggcgttagctttc 5493954  T
Q  227 tttttatacaaacacagagcaaaaaacgccgcggatacacagaagctagtgagtaataccacacagaggaacaattctcttcaagattcatcgaattcat 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5493953 tttttatacaaacacagagcaaaaaacgccgcggatacacagaagctagtgagtactaccacacagaggaacaattctcttcaagattcatcgaattcat 5493854  T
Q  327 ctgctccggtagtagcttcgaattttctctacattggaactgtggaaccttcgagaaggtcaacgacggtcaacgatcagaatcaaacggagaagcctaa 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493853 ctgctccggtagtagcttcgaattttctctacattggaactgtggaaccttcgagaaggtcaacgacggtcaacgatcagaatcaaacggagaagcctaa 5493754  T
Q  427 ccgttcaccgtatcataaactgaattccgttaagcgatccgatcggtatcggccgagtccagagttacagccaatgccgccgttgagtaaacctccgaac 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  5493753 ccgttcaccgtatcataaactgaattccgttaagcgatccgatcggtatcgtccgagtccggagttacagccaatgccgccgttgagtaaacctccgaac 5493654  T
Q  527 ggaaacattccgccggcgatgtcgtcggaagaagattccgatgaagaaagtaacgaaacagcgttccattcgccgcagaattcttcagtaagtcaggaag 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493653 ggaaacattccgccggcgatgtcgtcggaagaagattccgatgaagaaagtaacgaaacagcgttccattcgccgcagaattcttcagtaagtcaggaag 5493554  T
Q  627 atggattttacacgccgtattcagtttcacggcagagttctctcagtaacggtagtccggcgaaaaaagagagtaattcgacggttacgccgcttccgaa 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  5493553 atggattttacacgccgtattcagtttcacggcagagttctctcagtaacggtagtccggcgaagaaagagagtaattcgacggttacgccgcttcctaa 5493454  T
Q  727 atcgaagagaacttcaccgaaatcgaaatctgctctttctgcttcttctccggatattcgacacgtcatcattccttctatcaaacaaacaccactgccg 826  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493453 atcgaagagaacttcaccgaaatcgaaatctgctctttctgcttcttctccggatattcgacacgtcatcattccttctatcaaacaaacaccactgccg 5493354  T
Q  827 caacgtcagcaatcggagaaacagttaacctcctccggtggaataggacattcaagaaaaccgaaattctcagcaccaccaccaccgccgaatttggctc 926  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5493353 caacgtcagcaatcggagaaacagttaacctcctccggtggaataggacattcaagaaaaccgaaattctcagcaccaccaccaccgccgaatttggttc 5493254  T
Q  927 atcttcaatcaacaactaatacagtttca 955  Q
    |||||||||||||||||||||||||||||    
T  5493253 atcttcaatcaacaactaatacagtttca 5493225  T

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