View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17216_high_30 (Length: 335)
Name: NF17216_high_30
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_high_30 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 21199556 - 21199241
Alignment:
| Q |
20 |
tagagatgtgaaaataggttgataaaatggatttggtttattaaatctaatgtgtaaaatgtcggaatgacatgtcaacaacctcaatccttaactctat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21199556 |
tagagatgtgaaaataggttgataaaatggatttggtttattaaatctaatttgtaaaatgtcggaatgacatgtcaacaacctcaatccttaactctat |
21199457 |
T |
|
| Q |
120 |
tattttctatttaagaannnnnnncacattcctcacctctcactatgtgagtttgaacttacttgtagacttttattaatatcaacctatatttcatatt |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21199456 |
tattttctatttaagaatttttttcacattcctcacctctcactatgtgagtttgaacttacttgtagacttttattaatatcaacctatatttcatatt |
21199357 |
T |
|
| Q |
220 |
gttatcttcaatttcatatattgggaagaactttactccatgaataatcagaagttatttattcttttaacgttttcacaaactaaatattcaaggtatt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21199356 |
gttatcttcaatttcatatattgggaagaactttactccatgaataatcagaagttatttattcttttaacgttttcacaaactaaatattcaagatatt |
21199257 |
T |
|
| Q |
320 |
agcgcaatgcgcaagc |
335 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21199256 |
agcgcaatgcgcaagc |
21199241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 27255408 - 27255093
Alignment:
| Q |
20 |
tagagatgtgaaaataggttgataaaatggatttggtttattaaatctaatgtgtaaaatgtcggaatgacatgtcaacaacctcaatccttaactctat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27255408 |
tagagatgtgaaaataggttgataaaatggatttggtttattaaatctaatgtgtaaaatgtcggaatgacatgtcaacaacctcaatccttaactctat |
27255309 |
T |
|
| Q |
120 |
tattttctatttaagaannnnnnncacattcctcacctctcactatgtgagtttgaacttacttgtagacttttattaatatcaacctatatttcatatt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27255308 |
tattttctatttaagaatttttttaacattcctcacctctcactatgtgagtttgaacttacttgtagacttttattaatatcaacctatatttcatatt |
27255209 |
T |
|
| Q |
220 |
gttatcttcaatttcatatattgggaagaactttactccatgaataatcagaagttatttattcttttaacgttttcacaaactaaatattcaaggtatt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27255208 |
gttatcttcaatttcatatattgggaagaactttactccatgaataatcagaagttatttattcttttaacgttttcacaaactaaatattcaagatatt |
27255109 |
T |
|
| Q |
320 |
agcgcaatgcgcaagc |
335 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27255108 |
agcgcaatgcgcaagc |
27255093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University