View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17216_high_31 (Length: 326)

Name: NF17216_high_31
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17216_high_31
NF17216_high_31
[»] chr3 (6 HSPs)
chr3 (10-180)||(110112-110284)
chr3 (220-307)||(112714-112801)
chr3 (220-306)||(109986-110072)
chr3 (233-306)||(23291439-23291512)
chr3 (110-180)||(112598-112673)
chr3 (246-316)||(47667321-47667391)
[»] chr4 (4 HSPs)
chr4 (220-306)||(30367408-30367494)
chr4 (5-61)||(30367211-30367267)
chr4 (251-306)||(30366742-30366797)
chr4 (126-180)||(30367310-30367368)
[»] chr7 (2 HSPs)
chr7 (220-303)||(24601393-24601476)
chr7 (104-180)||(24601505-24601586)
[»] chr6 (4 HSPs)
chr6 (92-180)||(20647637-20647729)
chr6 (220-273)||(20647769-20647822)
chr6 (236-307)||(24715127-24715198)
chr6 (10-51)||(20647585-20647626)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 110284 - 110112
Alignment:
Q  10 gcagagaattgccgagccttttggagtaaagtccttaatgatcgtgaatagataagagaccgataatacaaaggtgaagaaattgcagttgccaaataaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  110284 gcagagaattgccgagccttttggagtaaagtccttaatgatcgtgaatagatcagagaccgataatacaaaggtgaagaaattgcagttgccaaataaa 110185  T
Q  110 gatcataaccgtaaccgtagaggaagggc--gtgggatgatgttaagcaacaaccagggacgtgataaagatg 180  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  110184 gatcataaccgtaactgtagaggaagggcgtgtgggatgatgttaagcaacaaccagggacgtgataaagatg 110112  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 112714 - 112801
Alignment:
Q  220 cattaaactgatgtggcagaatgctgcaatactattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  112714 cattaaactgatgtggcagaatgctgcaatactattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactca 112801  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 110072 - 109986
Alignment:
Q  220 cattaaactgatgtggcagaatgctgcaatactattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  110072 cattaaactgatgtggcagaatgctgcaatactattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactc 109986  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 23291439 - 23291512
Alignment:
Q  233 tggcagaatgctgcaatactattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactc 306  Q
    ||||||||| ||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||    
T  23291439 tggcagaatactgcaatactattggatgactgtgcaaagagcatttacactgtcggtgcaccacaattaaactc 23291512  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 112598 - 112673
Alignment:
Q  110 gatcataaccgtaaccgtagaggaagggc--gtgggat--gatgttaagc-aacaaccagggacgtgataaagatg 180  Q
    ||||||||||||||| |||||||||||||  |||||||  |||||||||| |||||||||||||||||||||||||    
T  112598 gatcataaccgtaactgtagaggaagggcgtgtgggatacgatgttaagcaaacaaccagggacgtgataaagatg 112673  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 47667391 - 47667321
Alignment:
Q  246 caatactattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactcataaagaaat 316  Q
    |||| ||||||| |||||||||||   | |||||||||||| |||||| | ||||||||||||||| ||||    
T  47667391 caatgctattggttgagtgtgtaatatgtctttacactgtcagtgcactataattaaactcataaataaat 47667321  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 30367408 - 30367494
Alignment:
Q  220 cattaaactgatgtggcagaatgctgcaatactattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactc 306  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  30367408 cattaaactgatgtgacagaatgctgcaatactattggatgagtgtgtaaagatcctttacactgtcggtgtaccaaaattaaactc 30367494  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 30367211 - 30367267
Alignment:
Q  5 gaggagcagagaattgccgagccttttggagtaaagtccttaatgatcgtgaataga 61  Q
    |||| ||||||||||| | |||||||||||||||| ||||||||||| |||||||||    
T  30367211 gaggtgcagagaattggcaagccttttggagtaaaatccttaatgattgtgaataga 30367267  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 30366797 - 30366742
Alignment:
Q  251 ctattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactc 306  Q
    ||||||||||||||||||||||| ||||||| |||| ||||| || ||||||||||    
T  30366797 ctattggatgagtgtgtaaagagtctttacagtgtcagtgcatcataattaaactc 30366742  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 30367310 - 30367368
Alignment:
Q  126 gtagaggaagggcgtggg----atgatgttaagcaacaaccagggacgtgataaagatg 180  Q
    |||||||||||||||| |    ||||||||||| |||||||||||||||||||||||||    
T  30367310 gtagaggaagggcgtgtgggatatgatgttaaggaacaaccagggacgtgataaagatg 30367368  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 24601476 - 24601393
Alignment:
Q  220 cattaaactgatgtggcagaatgctgcaatactattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaa 303  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||| |||||||| ||||||||||||    
T  24601476 cattaaactgatgtggcagaatgctgcaatattattggatgagtgttcaaagagcctttacattgtcggtggaccaaaattaaa 24601393  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 24601586 - 24601505
Alignment:
Q  104 aataaagatcataaccgtaaccgtagaggaagggc----gtgggatgatgttaagcaacaa-ccagggacgtgataaagatg 180  Q
    ||||||||||||||||||| | |||||||||||||    |||  ||||||||||||||||| ||||||||||||||||||||    
T  24601586 aataaagatcataaccgtatctgtagaggaagggcatgtgtgatatgatgttaagcaacaacccagggacgtgataaagatg 24601505  T

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Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 20647637 - 20647729
Alignment:
Q  92 ttgcagttgccaaataaagatcataaccgtaaccgtagaggaagggcgtggg----atgatgttaagcaacaaccagggacgtgataaagatg 180  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |    |||||||||||||||||||| ||||||||||||||||    
T  20647637 ttgcagttgccaaataaagatcataaccgtaactgtagaggaagggcgtgtgagatatgatgttaagcaacaaccaaggacgtgataaagatg 20647729  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 20647769 - 20647822
Alignment:
Q  220 cattaaactgatgtggcagaatgctgcaatactattggatgagtgtgtaaagag 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20647769 cattaaactgatgtggcagaatgctgcaatactattggatgagtgtgtaaagag 20647822  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 24715198 - 24715127
Alignment:
Q  236 cagaatgctgcaatactattggatgagtgtgtaaagagcctttacactgtcggtgcaccaaaattaaactca 307  Q
    |||||| |||||||||||||| |||| |||| |||||  ||||||||||||||||||||| |||||||||||    
T  24715198 cagaatactgcaatactattgaatgattgtgcaaagattctttacactgtcggtgcaccacaattaaactca 24715127  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 20647585 - 20647626
Alignment:
Q  10 gcagagaattgccgagccttttggagtaaagtccttaatgat 51  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  20647585 gcagagaattgctgagccttttggagtaaagtccttaatgat 20647626  T

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