View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_high_33 (Length: 316)
Name: NF17216_high_33
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_high_33 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 40224533 - 40224218
Alignment:
| Q |
1 |
tgctgcagtcatggccgaaattagccgtgaagaattggcttagtacaaagaacagttctgaaaagtttacctcagattattctgttacaggtgaaactca |
100 |
Q |
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| T |
40224533 |
tgctgcagtcatggccgaaattagccgtgaagaattggcttagtacaaagaacagttctgaaaagtttacctcagattattctgttacaggtgaaactca |
40224434 |
T |
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| Q |
101 |
attattttaattaagattgtgattggttttctttgagtttggtttcattttacgtttttcgtgttgaaattgagacattattttgtttaatctttgtggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40224433 |
attattttaattaagattgtgattggttttctttgagtttggtttcattttacgtttttcgtgttgaaattgagacattattttgtttaatctttgtggg |
40224334 |
T |
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| Q |
201 |
actcactcagggtctgcgacagaaacaagaaagagttgctcagaccaagatagttacatcctcgtaccagataatttttctggtaatttgcccaacactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40224333 |
actcactcagggtctgcgacagaaacaagaaagagttgctcagaccaagatagttacatcctcgtaccagataatttttctggtaatttgcccaacactt |
40224234 |
T |
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| Q |
301 |
tgttttatgatttgaa |
316 |
Q |
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|||||||||||||||| |
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| T |
40224233 |
tgttttatgatttgaa |
40224218 |
T |
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