View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17216_high_40 (Length: 266)

Name: NF17216_high_40
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17216_high_40
NF17216_high_40
[»] chr1 (4 HSPs)
chr1 (1-266)||(29443405-29443670)
chr1 (1-266)||(29423058-29423323)
chr1 (1-266)||(29453388-29453653)
chr1 (1-260)||(29467870-29468129)
[»] chr2 (25 HSPs)
chr2 (94-264)||(9320868-9321038)
chr2 (47-264)||(12018974-12019191)
chr2 (41-264)||(9284276-9284499)
chr2 (41-264)||(9315852-9316075)
chr2 (94-264)||(9328485-9328655)
chr2 (48-264)||(10352949-10353165)
chr2 (93-151)||(9061358-9061416)
chr2 (44-223)||(9364464-9364643)
chr2 (56-211)||(10335704-10335859)
chr2 (41-151)||(9291755-9291865)
chr2 (41-264)||(12012632-12012858)
chr2 (93-152)||(16268953-16269012)
chr2 (54-151)||(10371683-10371780)
chr2 (41-152)||(11987685-11987796)
chr2 (93-151)||(8573725-8573783)
chr2 (93-202)||(7115793-7115902)
chr2 (94-151)||(10347650-10347707)
chr2 (216-264)||(10347793-10347841)
chr2 (93-152)||(8579703-8579762)
chr2 (217-264)||(9061227-9061274)
chr2 (166-264)||(8573591-8573689)
chr2 (93-175)||(9065789-9065871)
chr2 (1-39)||(9065937-9065975)
chr2 (1-37)||(10347539-10347575)
chr2 (5-37)||(10371616-10371648)
[»] chr8 (1 HSPs)
chr8 (41-266)||(41966789-41967017)
[»] chr7 (4 HSPs)
chr7 (166-264)||(45243657-45243755)
chr7 (93-151)||(45230293-45230351)
chr7 (166-264)||(45237908-45238006)
chr7 (93-151)||(45243555-45243613)
[»] chr3 (1 HSPs)
chr3 (166-264)||(37462447-37462545)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 29443670 - 29443405
Alignment:
Q  1 taagaagtaccttctcttgcttgtttgattctccttcctggggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443670 taagaagtaccttctcttgcttgtttgattctccttcctggggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaatt 29443571  T
Q  101 ccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataaccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443570 ccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataaccta 29443471  T
Q  201 aaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443470 aaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagc 29443405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 29423058 - 29423323
Alignment:
Q  1 taagaagtaccttctcttgcttgtttgattctccttcctggggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaatt 100  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||| ||||||  ||||||||||||||||||||| ||||| ||||| |   ||||||||    
T  29423058 taagaagtaccttctcttgcttgtgcgattctccttcctagggaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaatt 29423157  T
Q  101 ccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataaccta 200  Q
    |||| |||| |||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| |||    
T  29423158 ccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctcaggatctacttgcaacagaaccatacctccatcgctcgaataagcta 29423257  T
Q  201 aaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagc 266  Q
    ||| |||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  29423258 aaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagc 29423323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 29453653 - 29453388
Alignment:
Q  1 taagaagtaccttctcttgcttgtttgattctccttcctggggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaatt 100  Q
    |||| ||||||||||||||||||| | |||||| ||||||||||| |||||| | |||||||||||||||||||| || || ||||| |   ||||||||    
T  29453653 taaggagtaccttctcttgcttgtataattctctttcctggggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaatt 29453554  T
Q  101 ccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataaccta 200  Q
    ||||||||| |||||||   ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||    
T  29453553 ccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttctcacaatctacttccaacagaaccatacttccatcgctcgaataagcta 29453454  T
Q  201 aaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagc 266  Q
    ||  || ||||| | ||||||||||| ||||||| ||||| |||||||||||||||| ||||||||    
T  29453453 aaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccagc 29453388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 29468129 - 29467870
Alignment:
Q  1 taagaagtaccttctcttgcttgtttgattctccttcctggggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaatt 100  Q
    ||||||||||||||||||||||||  ||||||| ||||| ||||| |||||| |||||||||||||||||||||| || || | || ||   ||||||||    
T  29468129 taagaagtaccttctcttgcttgtgcgattctcgttcctagggaaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaatt 29468030  T
Q  101 ccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataaccta 200  Q
    |||||||||||| |||||  |||||||||||||||||||||||||| ||||||| | |||||||  |||||||||||||||| |||||||||||||||||    
T  29468029 ccttcaacataattaacatgttcactcttgagatcataccaaaacaacttctcatggtctacttcaaacagaaccatacttccatcgctcgaataaccta 29467930  T
Q  201 aaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttac 260  Q
    ||  |||||||| |  |||  ||||| |||||||||||  | ||||||||||||||||||    
T  29467929 aaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttac 29467870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 264
Target Start/End: Original strand, 9320868 - 9321038
Alignment:
Q  94 aggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaa 193  Q
    ||||||||||||||||||||||||   | ||||||| | ||||||||||||||||||||||  ||||||   ||||| |||| |  ||| ||| ||||||    
T  9320868 aggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctcagcatctaccctcaacaaaaccttttttccatcactcgaa 9320967  T
Q  194 taacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacacca 264  Q
    |||||||||  |||||||| | |||||||||||  | ||||||||| | ||| ||||||||||||||||||    
T  9320968 taacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacacca 9321038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 264
Target Start/End: Complemental strand, 12019191 - 12018974
Alignment:
Q  47 gaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaaca 146  Q
    |||||| |||||||||||||||||||||| ||||| | ||| |   |||||||||||||||||||||||||    | |||||| | ||||||||||| ||    
T  12019191 gaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaacca 12019092  T
Q  147 gcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaa 246  Q
    || | | | ||| ||| | ||||| |||| |  ||| ||| |||||||||||||||   ||||||  ||| |||||||||  ||||||||||||   |||    
T  12019091 gcatattatgatttacatccaacaaaaccttttttccatcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccatcaa 12018992  T
Q  247 agtaaaaagtttacacca 264  Q
    ||||||||||||||||||    
T  12018991 agtaaaaagtttacacca 12018974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 264
Target Start/End: Complemental strand, 9284499 - 9284276
Alignment:
Q  41 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 140  Q
    ||||| |||||| | ||||||||| |||||||||| || || | |||||   |||||||||||||||||||| ||||    |||||||| | ||||||||    
T  9284499 gggaaggaaggtggcacaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcatacc 9284400  T
Q  141 aaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattc 240  Q
    ||| |||||||| || ||||| ||  || |||||| |||| | ||| || ||||||||||||  |||||||| | ||||| ||||| |||| |  ||||     
T  9284399 aaaccagcttcttacaatctatttctaatagaaccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgattt 9284300  T
Q  241 agccaaagtaaaaagtttacacca 264  Q
    | |||||||||||| |||||||||    
T  9284299 aaccaaagtaaaaattttacacca 9284276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 264
Target Start/End: Original strand, 9315852 - 9316075
Alignment:
Q  41 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 140  Q
    ||||| |||||| ||||||||||| |||||||||| || || | |||||   ||| |||||||||||||||| ||||   ||||||| | |  ||| |||    
T  9315852 gggaaggaaggtggtacaagactttcaacacaaatcatagcttcatccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacacc 9315951  T
Q  141 aaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattc 240  Q
    |||||||||||| || ||||| || ||| |||||| ||||||  || || ||||||||||||  | |||||    |||||| |||| ||||||| || |     
T  9315952 aaaacagcttcttacaatctatttccaatagaaccttacttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaatt 9316051  T
Q  241 agccaaagtaaaaagtttacacca 264  Q
    | ||||||||||||||||||||||    
T  9316052 aaccaaagtaaaaagtttacacca 9316075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 264
Target Start/End: Original strand, 9328485 - 9328655
Alignment:
Q  94 aggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaa 193  Q
    ||||||||||||||||||||||||   | ||||| | | ||||||| ||||||||||||||  ||| ||   ||||| |||| |  ||| ||| ||| ||    
T  9328485 aggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatccaccctcaacaaaaccttttttccatcactcaaa 9328584  T
Q  194 taacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacacca 264  Q
    |||||||||  |||||||| | |||||||||||  ||||||||||| | ||| ||||||||||||||||||    
T  9328585 taacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacacca 9328655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 10352949 - 10353165
Alignment:
Q  48 aaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaacag 147  Q
    ||||| |||||||||||||||||||||| || |  | |||||   || ||||| ||| ||||||||||||   || |||||  | |||||||||||| ||    
T  10352949 aaggtggtacaagacttccaacacaaatcatagtgtcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaaatag 10353048  T
Q  148 cttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaa 247  Q
     ||||||  ||||||   ||||| |||| |  ||||||| |||||||||||||||| |||||||| |  ||||||||||  |||| | |||| | ||| |    
T  10353049 attctcaacatctaccctcaacaaaaccttttttctatcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccaca 10353148  T
Q  248 gtaaaaagtttacacca 264  Q
    |||||||||||||||||    
T  10353149 gtaaaaagtttacacca 10353165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 9061416 - 9061358
Alignment:
Q  93 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 151  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  9061416 taggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttc 9061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 9364464 - 9364643
Alignment:
Q  44 aaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaa 143  Q
    ||||||||| |||||||||| ||||||||||| || || | || ||   |||||||||||  ||||  | ||||   ||||||||||||||| |||||||    
T  9364464 aaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaa 9364563  T
Q  144 acagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggt 223  Q
    ||||||||| |||||||| || ||| | |||| |  ||| ||| |||||||||||||||  |||||| | | ||||||||    
T  9364564 acagcttcttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggt 9364643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 10335704 - 10335859
Alignment:
Q  56 acaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcac 155  Q
    |||||||||||||||||||| || |  | |||||   ||||||||||||||||||||||||    ||||||||| | |||||||||||||| ||||| ||    
T  10335704 acaagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttcttac 10335803  T
Q  156 gatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaa 211  Q
     ||| | || ||| |||||| |||||| ||| ||  |||||||||||  |||||||    
T  10335804 aatcgatttccaatagaaccttacttccatcactacaataacctaaaggcctcaaa 10335859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 9291755 - 9291865
Alignment:
Q  41 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 140  Q
    ||||| |||||| ||| ||||||| |||||||||| || || | |||||   ||||||||||||||||||||||||    ||||||||| | ||||||||    
T  9291755 gggaaggaaggtggtagaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcatacc 9291854  T
Q  141 aaaacagcttc 151  Q
    |||||||||||    
T  9291855 aaaacagcttc 9291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 264
Target Start/End: Complemental strand, 12012858 - 12012632
Alignment:
Q  41 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 140  Q
    ||||| || ||| |||||||||||||||||||||| || || | ||| |   |||||||||||||||||||||||||   || |||||| | ||||||||    
T  12012858 gggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaaattaggaattccttcaacataactaac---ttgactcttcaaatcatacc 12012762  T
Q  141 aaaacagcttctcacgatctacttgc------aacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaaca 234  Q
    ||| |||||||| | ||| ||| | |      |||| ||||||  | | |||  |||||||||| |||   ||||||  | |||||||||||  ||||||    
T  12012761 aaaccagcttcttatgatttacctccaacaaaaacaaaaccattttaccatcattcgaataacccaaaggtctcaaaaatatcaaaggtaaaacgaaaca 12012662  T
Q  235 cgattcagccaaagtaaaaagtttacacca 264  Q
    ||||||  ||||||||||||||||||||||    
T  12012661 cgattccaccaaagtaaaaagtttacacca 12012632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 16268953 - 16269012
Alignment:
Q  93 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 152  Q
    ||||||||||||||||||||||||| | ||||||||| | |||||||||||||| |||||    
T  16268953 taggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttct 16269012  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 10371683 - 10371780
Alignment:
Q  54 gtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 151  Q
    |||||||||| ||||||||||  || |||| |||||   ||| | |||||||||||||||||||   ||||||||| | |||||||||||||||||||    
T  10371683 gtacaagactaccaacacaaaccatagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 10371780  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 11987796 - 11987685
Alignment:
Q  41 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 140  Q
    ||||| || ||| |||||||||||||||||||||| || || | ||| |   |||||||||| |||||||||||||    ||||||||| | ||||||||    
T  11987796 gggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcatacc 11987697  T
Q  141 aaaacagcttct 152  Q
    ||| ||||||||    
T  11987696 aaaccagcttct 11987685  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 8573783 - 8573725
Alignment:
Q  93 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 151  Q
    |||||||||||||||||||||| ||   ||||||||| | |||||||||||||||||||    
T  8573783 taggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttc 8573725  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 7115902 - 7115793
Alignment:
Q  93 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaaccatacttctatcgctcga 192  Q
    ||||||||||||||||| |||||||   ||| ||||| | ||||||||||| |||||||  || ||||| || ||| |||||| | |||| ||| || ||    
T  7115902 taggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatctatttccaatagaaccttgcttccatcactaga 7115803  T
Q  193 ataacctaaa 202  Q
    ||||||||||    
T  7115802 ataacctaaa 7115793  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 10347650 - 10347707
Alignment:
Q  94 aggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 151  Q
    |||||||||||||||||||||||    ||||||||| | |||||||||||||||||||    
T  10347650 aggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 10347707  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 10347793 - 10347841
Alignment:
Q  216 tcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacacca 264  Q
    |||||||||||  ||||||||| ||||||| ||||||||||||||||||    
T  10347793 tcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacacca 10347841  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 8579762 - 8579703
Alignment:
Q  93 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 152  Q
    |||||||||||| |||| || ||||   |||||| |||||||||||||||||||||||||    
T  8579762 taggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttct 8579703  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 9061274 - 9061227
Alignment:
Q  217 caaaggtaaactgaaacacgattcagccaaagtaaaaagtttacacca 264  Q
    ||||||| || |||||||||||| | ||||||||||||||||||||||    
T  9061274 caaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacacca 9061227  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 8573689 - 8573591
Alignment:
Q  166 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacacca 264  Q
    |||||||||| |||||| ||| || ||||||||||||  |||| ||| | | ||| ||  | |||||||||||| | | ||||||||||||||||||||    
T  8573689 caacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttacacca 8573591  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 9065871 - 9065789
Alignment:
Q  93 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctacttgcaacagaacc 175  Q
    |||||| ||||||||||||| ||||   ||||||||| | |||||||||||| ||||||| | ||||||| | ||||| ||||    
T  9065871 taggaactccttcaacataaataacttgttcactcttcaaatcataccaaaagagcttctgatgatctacctccaacaaaacc 9065789  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9065975 - 9065937
Alignment:
Q  1 taagaagtaccttctcttgcttgtttgattctccttcct 39  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  9065975 taagaagtaccttctcttggttgttcgattctccttcct 9065937  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10347539 - 10347575
Alignment:
Q  1 taagaagtaccttctcttgcttgtttgattctccttc 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  10347539 taagaagtaccttctcttgcttggatgattctccttc 10347575  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 10371616 - 10371648
Alignment:
Q  5 aagtaccttctcttgcttgtttgattctccttc 37  Q
    |||||||||||||||||||| ||||||||||||    
T  10371616 aagtaccttctcttgcttgtatgattctccttc 10371648  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 266
Target Start/End: Complemental strand, 41967017 - 41966789
Alignment:
Q  41 gggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcatacc 140  Q
    ||||| |||||| |||||||||||||||||||||  ||||| | ||| |   |||||||||||||||||||| |||    ||||||||| | ||||||||    
T  41967017 gggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcatacc 41966918  T
Q  141 aaaacagcttc---tcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacga 237  Q
    ||||||| |||   |||  |  | |||||||||||||| | |||| |||||| ||| ||||||||| || ||| | | |||||| | || ||||||| ||    
T  41966917 aaaacagtttcaaatcattaattccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaaga 41966818  T
Q  238 ttcagccaaagtaaaaagtttacaccagc 266  Q
    || | ||||||||||||||||||||||||    
T  41966817 tttaaccaaagtaaaaagtttacaccagc 41966789  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 45243657 - 45243755
Alignment:
Q  166 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacacca 264  Q
    |||||||||  |||||| ||| |||||||||| ||||  |||||||| |  |||| | ||| |||||||||||| | ||||||||||||||||||||||    
T  45243657 caacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 45243755  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 45230293 - 45230351
Alignment:
Q  93 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 151  Q
    |||||||||||| ||||| | ||||   ||||||||||| |||||||||||||||||||    
T  45230293 taggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 45237908 - 45238006
Alignment:
Q  166 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacacca 264  Q
    |||||||||  |||||| |||||| ||||||| ||||  ||||||   | ||| | | ||| |||||||||||||| | ||||||||||||||||||||    
T  45237908 caacagaactttacttcgatcgcttgaataacataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacacca 45238006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 45243555 - 45243613
Alignment:
Q  93 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 151  Q
    |||||||||||| ||||||| |||    |||||| ||||||||||||||||||||||||    
T  45243555 taggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttc 45243613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 37462447 - 37462545
Alignment:
Q  166 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacacca 264  Q
    ||||| |||| |||||| ||| || ||||||| ||||  |||||||| | |||||||| || |||||||||||| | ||| |||| |||||||||||||    
T  37462447 caacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttacacca 37462545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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