View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_high_41 (Length: 247)
Name: NF17216_high_41
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 43096066 - 43095843
Alignment:
| Q |
9 |
gattattctgatctttagtgttttgtccttcccatggcctagaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataat |
108 |
Q |
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| T |
43096066 |
gattcttctgatctttagtgttttgtccttcccatggccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataat |
43095967 |
T |
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| Q |
109 |
tgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagttatatgttattatccatataaaactatttcatgtttgcttatc |
208 |
Q |
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| T |
43095966 |
tgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagttatatgttattatccatataaaactatttcatgtttgcttatc |
43095867 |
T |
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| Q |
209 |
ataaatcttataggaataaattat |
232 |
Q |
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|||||||||| ||||||||||||| |
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| T |
43095866 |
ataaatcttaaaggaataaattat |
43095843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 44187745 - 44187959
Alignment:
| Q |
17 |
tgatctttagtgttttgtccttcccatggcctagaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggcat |
116 |
Q |
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| T |
44187745 |
tgatccttagtgttttgtccttcccatggccttgaagccatccatctatcaagccaattccatctccaatggggattgtttggatccataattgtggcat |
44187844 |
T |
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| Q |
117 |
ctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagttatatgttattatccatataaaactatttcatgtttgcttatcataaatct |
216 |
Q |
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| T |
44187845 |
ctgtaggttttgaagagttcctccatgtttgctgttagagaaattaagctataggttattatccatat-aaactatttcatgtttgcttatgataaacct |
44187943 |
T |
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| Q |
217 |
tataggaataaattat |
232 |
Q |
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| T |
44187944 |
taaatgaataaattat |
44187959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 32726923 - 32727087
Alignment:
| Q |
67 |
aagccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagtt |
166 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| | |
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| T |
32726923 |
aagccaattccatctccaatggggattgtttggatccataactgtagcatctgtaggttttgaagggttcctccatgtttgctgttagagaaattaagct |
32727022 |
T |
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| Q |
167 |
atatgttattatccatataaaactatttcatgtttgcttatcataaatcttataggaataaattat |
232 |
Q |
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| T |
32727023 |
ataggttattatccatat-aaactatttcatgtttgcttatgataaaccttaaatgaataaattat |
32727087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 10768988 - 10769091
Alignment:
| Q |
53 |
gccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgtt |
152 |
Q |
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| T |
10768988 |
gccatccatctctctaaccaactccatccccagtgaggattgtttggatccataaatgtttggtttatagattttgaagaattcttccatgtttgctgtt |
10769087 |
T |
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| Q |
153 |
agag |
156 |
Q |
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|||| |
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| T |
10769088 |
agag |
10769091 |
T |
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