View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17216_high_46 (Length: 215)

Name: NF17216_high_46
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17216_high_46
NF17216_high_46
[»] chr8 (1 HSPs)
chr8 (18-170)||(43744237-43744389)
[»] chr7 (8 HSPs)
chr7 (18-170)||(3146685-3146837)
chr7 (124-170)||(8646298-8646344)
chr7 (118-170)||(8586401-8586453)
chr7 (125-170)||(8616136-8616181)
chr7 (124-170)||(8653865-8653911)
chr7 (127-170)||(13334072-13334115)
chr7 (124-170)||(1300879-1300925)
chr7 (118-158)||(17275026-17275066)
[»] chr5 (1 HSPs)
chr5 (18-170)||(28219339-28219491)
[»] chr1 (4 HSPs)
chr1 (117-170)||(4679248-4679301)
chr1 (124-170)||(15594456-15594502)
chr1 (127-170)||(29465270-29465313)
chr1 (45-78)||(15594548-15594581)
[»] chr2 (6 HSPs)
chr2 (22-170)||(7541647-7541795)
chr2 (124-170)||(43624833-43624879)
chr2 (18-71)||(11998929-11998982)
chr2 (22-71)||(12259180-12259229)
chr2 (118-167)||(16658215-16658264)
chr2 (118-170)||(12246101-12246153)
[»] chr4 (2 HSPs)
chr4 (124-170)||(9336595-9336641)
chr4 (116-148)||(30774695-30774727)
[»] chr3 (1 HSPs)
chr3 (125-170)||(53416761-53416806)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 43744389 - 43744237
Alignment:
Q  18 aggtgatatcatgggtgtggtaattgctaggaacactagcattcctgtgaagaaaacaaaaaagtattcaacaactattgataaccaagctactgctcct 117  Q
    |||||||||||||  |||||||||| ||||||||||||||||||| || ||||||||||  ||   | |||||| ||  ||||||||||||||||||  |    
T  43744389 aggtgatatcatgactgtggtaatttctaggaacactagcattcccgtcaagaaaacaatcaaacgtgcaacaattagagataaccaagctactgctaat 43744290  T
Q  118 attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43744289 attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 43744237  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 3146837 - 3146685
Alignment:
Q  18 aggtgatatcatgggtgtggtaattgctaggaacactagcattcctgtgaagaaaacaaaaaagtattcaacaactattgataaccaagctactgctcct 117  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||   ||||||||  ||| |||||||| | || | | ||||    
T  3146837 aggtgatatcatgggtgtcgtaattgctagaaacactagcattcctatcaagaaaacaaaaggttattcaacggctagtgataacctaacttcag-tcct 3146739  T
Q  118 -attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
     || ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3146738 catcaaagtttatgagggtgagagagcaagagctagtgacaacaatctgcttgg 3146685  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 8646344 - 8646298
Alignment:
Q  124 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8646344 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 8646298  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 8586401 - 8586453
Alignment:
Q  118 attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  8586401 attaaggtttatgagggtgagagagcaagagctagtgacaacaatctgcttgg 8586453  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 8616181 - 8616136
Alignment:
Q  125 tttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  8616181 tttatgagggtgagagatcaagagctagtgacaacaatctgcttgg 8616136  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 8653911 - 8653865
Alignment:
Q  124 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||||    
T  8653911 gtttatgagggtgagagaccaagagctagtgacaataatctgcttgg 8653865  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 13334072 - 13334115
Alignment:
Q  127 tatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||    
T  13334072 tatgagggtgagagagcaagagctagtgacaataatctacttgg 13334115  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 1300925 - 1300879
Alignment:
Q  124 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    ||||||||||||||||||||||||||    |||||||||||||||||    
T  1300925 gtttatgagggtgagagagcaagagcgcaagacaacaatctgcttgg 1300879  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 17275066 - 17275026
Alignment:
Q  118 attaaagtttatgagggtgagagagcaagagcaagtgacaa 158  Q
    ||||| || ||||||||||||||| ||||||||||||||||    
T  17275066 attaatgtctatgagggtgagagaccaagagcaagtgacaa 17275026  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 28219491 - 28219339
Alignment:
Q  18 aggtgatatcatgggtgtggtaattgctaggaacactagcattcctgtgaagaaaacaaaaaagtattcaacaactattgataaccaagctactgctcct 117  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||   |||| |||||||   | |  ||||  |   |||||||||| |  || |  |    
T  28219491 aggtgatatcatgagtgtgataattcctaggaacactagcattcctaccaagataacaaaaggttttataacagattacgataaccaagtttgtgttggt 28219392  T
Q  118 attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    ||| | |||||||||||||||||||||| ||||||||||||||||||||||||    
T  28219391 atttatgtttatgagggtgagagagcaaaagcaagtgacaacaatctgcttgg 28219339  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 4679248 - 4679301
Alignment:
Q  117 tattaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    |||||| ||||||||||||||||||||||||||||  |||||||||||||||||    
T  4679248 tattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttgg 4679301  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 15594502 - 15594456
Alignment:
Q  124 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||    
T  15594502 gtttatgagggtgagagagcaagagctagtgacaataatttgcttgg 15594456  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 29465313 - 29465270
Alignment:
Q  127 tatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||    
T  29465313 tatgagggtgagagagcaagagctagtgacaattatctgcttgg 29465270  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 15594581 - 15594548
Alignment:
Q  45 taggaacactagcattcctgtgaagaaaacaaaa 78  Q
    ||||||||||||||||||||| ||||||||||||    
T  15594581 taggaacactagcattcctgtcaagaaaacaaaa 15594548  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 7541795 - 7541647
Alignment:
Q  22 gatatcatgggtgtggtaattgctaggaacactagcattcctgtgaagaaaacaaaaaagtattcaacaactattgataaccaagctactgctcctatta 121  Q
    ||||| |||| |||||| ||| || |||||||| |||||||||| || ||||||| |   |||  ||||||||  |||||||||    ||||   |||||    
T  7541795 gatataatggatgtggtgattcctcggaacacttgcattcctgtcaataaaacaagaccctatgtaacaactaaagataaccaaatctctgccaatatta 7541696  T
Q  122 aagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    | |||||||||||||||||||||||||| ||||| |||||| |||||||    
T  7541695 atgtttatgagggtgagagagcaagagccagtgataacaatttgcttgg 7541647  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 43624879 - 43624833
Alignment:
Q  124 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| ||||    
T  43624879 gtttatgagtgtgagagagcatgagtaagtgacaacaatctgattgg 43624833  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 11998982 - 11998929
Alignment:
Q  18 aggtgatatcatgggtgtggtaattgctaggaacactagcattcctgtgaagaa 71  Q
    ||||| ||||||| ||||||| ||| ||||||||||| |||||| |||||||||    
T  11998982 aggtggtatcatgagtgtggtgattcctaggaacacttgcattcatgtgaagaa 11998929  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 12259180 - 12259229
Alignment:
Q  22 gatatcatgggtgtggtaattgctaggaacactagcattcctgtgaagaa 71  Q
    |||||||||| |||||| ||| ||||||||||| |||||||||| |||||    
T  12259180 gatatcatggatgtggtgattcctaggaacacttgcattcctgtcaagaa 12259229  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 16658215 - 16658264
Alignment:
Q  118 attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgct 167  Q
    ||||| ||||||||||||||||||||||||||   |||||| ||||||||    
T  16658215 attaatgtttatgagggtgagagagcaagagctgctgacaataatctgct 16658264  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 12246101 - 12246153
Alignment:
Q  118 attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    ||||| ||||| |||||||||||| ||| ||| |||||||||||| |||||||    
T  12246101 attaaggtttacgagggtgagagaacaaaagccagtgacaacaatttgcttgg 12246153  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 9336595 - 9336641
Alignment:
Q  124 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    |||||||||||||||||| ||||||| | |||||| |||||||||||    
T  9336595 gtttatgagggtgagagaccaagagctactgacaataatctgcttgg 9336641  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 30774727 - 30774695
Alignment:
Q  116 ctattaaagtttatgagggtgagagagcaagag 148  Q
    ||||||| |||||||||||||||||||||||||    
T  30774727 ctattaatgtttatgagggtgagagagcaagag 30774695  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 53416761 - 53416806
Alignment:
Q  125 tttatgagggtgagagagcaagagcaagtgacaacaatctgcttgg 170  Q
    ||||||||||||||||| ||||||| | |||||| |||||||||||    
T  53416761 tttatgagggtgagagaccaagagctactgacaataatctgcttgg 53416806  T

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