View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_high_8 (Length: 557)
Name: NF17216_high_8
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 550
Target Start/End: Complemental strand, 10976945 - 10976406
Alignment:
| Q |
16 |
atatatactccttcaaaggaagttatagcagctaacaaactaattaacttacaacgacgaattactaactaaatacagttgga-actagttctttaacaa |
114 |
Q |
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| T |
10976945 |
atatatactccttcaaaggaagttatagaagctaacaaagtaactaacttacaacgaccaataactaactaaatacagttgaatactagttgtttagcaa |
10976846 |
T |
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| Q |
115 |
gctaatttgacac--ttttttagttaagttttgcttggataagnnnnnnnnnnnngttattaatgtaattatgatattttgtataatgttcaaa-acctc |
211 |
Q |
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| T |
10976845 |
ggtaatttgactagtttttttagttaagctttacttggatta-agttttttttttgttattaatgtaattatgatattttgtataatgttcaaacacctc |
10976747 |
T |
|
| Q |
212 |
taaaatactaatcttgctttatttaaacatgcagaattttcattggataaggcactaaaatggtctgatagattagcaattttaatcggagttgccaagg |
311 |
Q |
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| T |
10976746 |
taaaatactaatcttgctttatttaaacatgcagaattttcaccggataaggctctaaaatggtctgatagattagcaattttaatcggagttgccaagg |
10976647 |
T |
|
| Q |
312 |
cggtgcattttttacatactggaattataccaggttgttttagaaacaaattaaagacaaacaatgttttacttgacgaacatcgctttcccaaactatg |
411 |
Q |
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| T |
10976646 |
cggtgcattttttacatactggaattataccaggttgttttagaaacaaattaaagacaaacaatgttttacttgacgaacatcgctttcccaaactaag |
10976547 |
T |
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| Q |
412 |
tgactatggtatgtctatgatcgccgaagagatcgaaaacattcaggtattgttgtttcatattttattcaactatataaata-tttaccttggtccatt |
510 |
Q |
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| T |
10976546 |
tgactatggtatgtctatgatcgccgaagagatcgaaaacattcaggtattgttgtttcatattttattcatctatataactattttaccttggtccatt |
10976447 |
T |
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| Q |
511 |
atgcttgaaactatgaagattga-ctctgttgcttcctatg |
550 |
Q |
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| T |
10976446 |
atgcttgatcccttgaatattgacctctgttgctttctatg |
10976406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 278 - 423
Target Start/End: Original strand, 8167931 - 8168076
Alignment:
| Q |
278 |
gatagattagcaattttaatcggagttgccaaggcggtgcattttttacatactggaattataccaggttgttttagaaacaaattaaagacaaacaatg |
377 |
Q |
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|||||| | |||||||| || |||||||| ||||| |||||||| ||||||||||| |||||||||| |||||||| ||| || |||||||||| | || |
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| T |
8167931 |
gatagactggcaattttgattggagttgcaaaggcagtgcatttcttacatactggtgttataccaggatgttttagcaaccaactaaagacaaagagtg |
8168030 |
T |
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| Q |
378 |
ttttacttgacgaacatcgctttcccaaactatgtgactatggtat |
423 |
Q |
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| T |
8168031 |
tgttacttgatgaacactgcattccaaaactaagtgactatggtat |
8168076 |
T |
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