View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17216_low_13 (Length: 519)

Name: NF17216_low_13
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17216_low_13
NF17216_low_13
[»] chr2 (8 HSPs)
chr2 (9-503)||(23766949-23767451)
chr2 (130-503)||(23796142-23796515)
chr2 (100-382)||(23784775-23785057)
chr2 (100-329)||(30383595-30383824)
chr2 (100-325)||(30393750-30393975)
chr2 (9-85)||(23796545-23796621)
chr2 (100-166)||(8381668-8381734)
chr2 (100-163)||(30482157-30482220)
[»] chr5 (1 HSPs)
chr5 (100-325)||(41628725-41628950)
[»] chr1 (1 HSPs)
chr1 (14-52)||(38021488-38021526)
[»] chr7 (1 HSPs)
chr7 (8-53)||(33677488-33677533)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 9 - 503
Target Start/End: Complemental strand, 23767451 - 23766949
Alignment:
Q  9 aattattctacctaggaatcgaactcgggttctctcgaatgattcatcattggtgaagcacattagtagagtagtgcnnnnnnnnnnnnnn--------t 100  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||                      |    
T  23767451 aattgttctacctaagaatcgaacccgggttctctcgaatgattcatcattggtgaagctcattagtagagcagtgcaaaaaaaataaaaaaataaaaat 23767352  T
Q  101 aaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23767351 aaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttggtccacttttctccttctagtttaacaagaccgcgagttattaacttc 23767252  T
Q  201 ataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23767251 ataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaacc 23767152  T
Q  301 aaataaaagattttttccctgcatacaatgggtggaatattagtgaagatcaattgtaccacgacatgacttcaatgaggttgtcgctaattggctcagg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  23767151 aaataaaagattttttccctgcatacaatgggtggaatattagtgaagatcaattgtaccacggcatgacttcaatgaggttgtcgctaatcggctcagg 23767052  T
Q  401 atgttgatgatgagttcaatgatcattatagctagattaccacatatggttctgagtaaatgtacgcaaacagcagctctatttttactgagagggttgt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23767051 atgttgatgatgagttcaatgatcattatagctagattaccacatatggttctgagtaaatgtacgcaaacaacagctctatttttactgagagggttgt 23766952  T
Q  501 gtt 503  Q
    |||    
T  23766951 gtt 23766949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 130 - 503
Target Start/End: Complemental strand, 23796515 - 23796142
Alignment:
Q  130 ggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23796515 ggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactc 23796416  T
Q  230 agatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23796415 agatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaat 23796316  T
Q  330 gggtggaatattagtgaagatcaattgtaccacgacatgacttcaatgaggttgtcgctaattggctcaggatgttgatgatgagttcaatgatcattat 429  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23796315 gggtggaatattagtgaagatcaattgtaccacggcatgacttcaatgaggttgtcgctaatcggctcaggatgttgatgatgagttcaatgatcattat 23796216  T
Q  430 agctagattaccacatatggttctgagtaaatgtacgcaaacagcagctctatttttactgagagggttgtgtt 503  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23796215 agctagattaccacatatggttctgagtaaatgtacgcaaacaacagctctatttttactgagagggttgtgtt 23796142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 100 - 382
Target Start/End: Original strand, 23784775 - 23785057
Alignment:
Q  100 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 199  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23784775 taaccttcaatttttccatgtgaaacgcagggttgattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 23784874  T
Q  200 cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaac 299  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||    
T  23784875 cataaacttatattgaacctttgggaactcagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaac 23784974  T
Q  300 caaataaaagattttttccctgcatacaatgggtggaatattagtgaagatcaattgtaccacgacatgacttcaatgaggtt 382  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  23784975 caaataaaagactttttccctgcatacaatgggtggaatattagtgaagatcaattgtaccataacatgacttcaatgaggtt 23785057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 100 - 329
Target Start/End: Complemental strand, 30383824 - 30383595
Alignment:
Q  100 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 199  Q
    |||||||||| ||||| |  || |||||||||||||||| | ||||||||||||||||||||||||| ||    ||| ||||  |   || || ||||||    
T  30383824 taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcataattagcaagtgcattagctagtaactt 30383725  T
Q  200 cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaac 299  Q
     | || ||| || | |  ||||||||| ||||| |||||||| || || ||| ||||||||||||||||  | | | |||||| ||||||| ||||||||    
T  30383724 gaaaatcttgtaattaggctttgggaattcagacatcttgttcaacacatcttttatttgctcaggttctgtcaaagtcacccttggttttattccaaac 30383625  T
Q  300 caaataaaagattttttccctgcatacaat 329  Q
    |||||| |||| || |||||||||||||||    
T  30383624 caaatataagaattcttccctgcatacaat 30383595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 100 - 325
Target Start/End: Complemental strand, 30393975 - 30393750
Alignment:
Q  100 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 199  Q
    |||||||||||| ||| |  || |||||||||||||||| |||||||||||||||||| ||||||||  |     || ||||||| | || || ||||||    
T  30393975 taaccttcaattgttctaaatggaaagcagggttgattagccttctatgcttgctccatttttctcccccataactagcaagaccactagctagtaactt 30393876  T
Q  200 cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaac 299  Q
     | || |||||| | |  ||||||||| ||||| || ||||| ||||| ||| ||||||||||||||||  | ||| | | || ||||||| ||||||||    
T  30393875 gaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaac 30393776  T
Q  300 caaataaaagattttttccctgcata 325  Q
    ||||||||||| || || ||||||||    
T  30393775 caaataaaagaattctttcctgcata 30393750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 23796621 - 23796545
Alignment:
Q  9 aattattctacctaggaatcgaactcgggttctctcgaatgattcatcattggtgaagcacattagtagagtagtgc 85  Q
    |||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  23796621 aattgttctacctaagaatcgaacttggattctctcgaatgattcatcattggtgaagctcattagtagagcagtgc 23796545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 8381668 - 8381734
Alignment:
Q  100 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctcc 166  Q
    |||||||||||||||| |  || ||||||| ||| |||| |||||||||||| ||||||||||||||    
T  8381668 taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctcc 8381734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 30482220 - 30482157
Alignment:
Q  100 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttc 163  Q
    |||||||||||||||| |  || || ||||| || |||||| ||||||||||||||||||||||    
T  30482220 taaccttcaatttttctaaatggaatgcaggatttattatctttctatgcttgctccacttttc 30482157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 325
Target Start/End: Original strand, 41628725 - 41628950
Alignment:
Q  100 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt 199  Q
    ||||||||||||||||    || ||||| |||||||||| ||||||||||||||||||||||||||| || ||  |  ||||||| | |  || ||||||    
T  41628725 taaccttcaatttttctgaatggaaagcggggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt 41628824  T
Q  200 cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaac 299  Q
     | || |||||  | |  |||||| || ||||| || ||||| ||||| ||| | ||||||||||||||  | |||||||||| ||||||||||||||||    
T  41628825 gaaaatcttatgattattctttggaaagtcagagatattgttcaatacatctatgatttgctcaggttctgtgagaatcacccttggttttgttccaaac 41628924  T
Q  300 caaataaaagattttttccctgcata 325  Q
    || |||||||| || |||||| ||||    
T  41628925 cacataaaagaattcttccctacata 41628950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 38021526 - 38021488
Alignment:
Q  14 ttctacctaggaatcgaactcgggttctctcgaatgatt 52  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  38021526 ttctacctaggaatcgaactcaggttctctcaaatgatt 38021488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 33677488 - 33677533
Alignment:
Q  8 aaattattctacctaggaatcgaactcgggttctctcgaatgattc 53  Q
    ||||||||| ||| |||||||||||||| |||||| ||||||||||    
T  33677488 aaattattccacccaggaatcgaactcgcgttctcccgaatgattc 33677533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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