View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17216_low_15 (Length: 482)

Name: NF17216_low_15
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17216_low_15
NF17216_low_15
[»] chr8 (12 HSPs)
chr8 (179-471)||(25031025-25031317)
chr8 (20-141)||(25031355-25031476)
chr8 (183-384)||(20506986-20507188)
chr8 (187-384)||(24525313-24525511)
chr8 (220-384)||(24489451-24489615)
chr8 (220-382)||(30078485-30078647)
chr8 (185-369)||(25895866-25896051)
chr8 (245-381)||(26034388-26034524)
chr8 (283-372)||(24942490-24942579)
chr8 (220-372)||(25923749-25923901)
chr8 (20-141)||(20506819-20506943)
chr8 (221-342)||(26038248-26038369)
[»] chr4 (2 HSPs)
chr4 (229-384)||(17772753-17772908)
chr4 (20-140)||(17772547-17772670)
[»] chr2 (1 HSPs)
chr2 (221-384)||(36162394-36162557)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 179 - 471
Target Start/End: Complemental strand, 25031317 - 25031025
Alignment:
Q  179 gtacttttgtactaatgttgtgccatcacttgtgattatgcgtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttac 278  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25031317 gtacttttgtactaatgttgtaccatcacttgtgattatgcgcacaagcagtggccacttcgcacccccgttctaaattatccagaattttgcaatttac 25031218  T
Q  279 atcatctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaa 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25031217 atcatctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaa 25031118  T
Q  379 ggtttgctttatttaaattaatttttggtctatctacctatgtatgtatatctctctctatatacacacaaatataattgagtcattgtgtcc 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  25031117 ggtttgctttatttaaattaatttttggtctatctacctatgtatgtatatatctctctatatacacagaaatataattgagtcattgtgtcc 25031025  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 25031476 - 25031355
Alignment:
Q  20 gaggaagcatattttgatgtcttttccctccgtggaagagaatttatggaccctgtgctcagacacctccgagataatggtgatatacatctacttatgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25031476 gaggaagcatattttgatgtcttttccctccgtggaagagaatttatggaccctgtgctcagacacctccgagataatggtgatatacatctacttatgc 25031377  T
Q  120 gtcatttcacatcaaaggtgaa 141  Q
    ||||||||||||||||||||||    
T  25031376 gtcatttcacatcaaaggtgaa 25031355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 183 - 384
Target Start/End: Original strand, 20506986 - 20507188
Alignment:
Q  183 ttttgtactaatgttgtgccatcacttgtgattatgc-gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatc 281  Q
    |||||||||||| ||| ||||||||||||  ||||   ||||||||||  ||| ||||||| |||  |||||||||||||||||||||||||||| || |    
T  20506986 ttttgtactaatattgggccatcacttgttgttatcatgtacaagcagaagccgcttcgcagccccattctaaattatccagaattttgcaatttgcacc 20507085  T
Q  282 atctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggt 381  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  20507086 atctaaagttcattattccctgcttcaacacgaatcttctgctcaacgtgcttgagaaatgccatatgcttaaagttctcataattcagagtagcaaggt 20507185  T
Q  382 ttg 384  Q
    |||    
T  20507186 ttg 20507188  T

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Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 187 - 384
Target Start/End: Original strand, 24525313 - 24525511
Alignment:
Q  187 gtactaatgttgtgccatcacttgtgattatgc-gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatct 285  Q
    |||||||| ||||||||||||||||  ||||   |||||| |||||||||||||   ||| ||||||||| |||||||| ||| |||| ||| ||| |||    
T  24525313 gtactaatattgtgccatcacttgttgttatcatgtacaaccagtggccacttcattcccatgttctaaactatccagagtttcgcaaattagatcgtct 24525412  T
Q  286 aaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttg 384  Q
    ||||||||||||||||||||| |||   | ||||||||||||||||||||||||||||||||||||| |||||||| |||| || || |||||||||||    
T  24525413 aaagttcattcttccctgctttaactcaaatcttctgctcaacgtgcttgagaaatgccatatgcttaaagttctcataatccaaagcagcaaggtttg 24525511  T

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Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 220 - 384
Target Start/End: Original strand, 24489451 - 24489615
Alignment:
Q  220 gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtctt 319  Q
    ||||||||||||||| ||||   |||||||| ||||| || || ||||  |||||||||||||||||||||||||||| || | |||||||   | ||||    
T  24489451 gtacaagcagtggccgcttcatgcccctgttataaataattcaaaattccgcaatttacatcatctaaagttcattctccctttcttcaactcaaatctt 24489550  T
Q  320 ctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttg 384  Q
    |||||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  24489551 ctgctcaaagtgcttcagaaatgccatctgcttcaagttctcataattcagagtagcaaggtttg 24489615  T

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Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 382
Target Start/End: Original strand, 30078485 - 30078647
Alignment:
Q  220 gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtctt 319  Q
    ||||| ||||| ||||||||   |||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||  || ||||    
T  30078485 gtacatgcagttgccacttcatgcccctgttctaaattatccagaatttcgcaatttatttcatctaaagttcattcttccctgcttcaactcgaatctt 30078584  T
Q  320 ctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtt 382  Q
    ||| || |||  ||||| ||||||||  |||||| ||||||| ||||| |||| |||||||||    
T  30078585 ctggtcgacgctcttgaaaaatgccacgtgcttcgagttctcataattaagagcagcaaggtt 30078647  T

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Target: chr8; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 185 - 369
Target Start/End: Complemental strand, 25896051 - 25895866
Alignment:
Q  185 ttgtactaatgttgtgccatcacttgtgattatg-cgtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcat 283  Q
    |||||||||| |||  |||||||||||  ||||  ||||||| |||| ||||||||   || |||||||||| |||||||| ||| ||||||||| ||||    
T  25896051 ttgtactaattttgctccatcacttgttgttatcacgtacaaccagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcat 25895952  T
Q  284 ctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattca 369  Q
    |||||||||||||||||||| ||||||  || | |  || |||||||||||||||||||||| ||||||||||||||| |||||||    
T  25895951 ctaaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattca 25895866  T

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Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 245 - 381
Target Start/End: Original strand, 26034388 - 26034524
Alignment:
Q  245 cctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgcc 344  Q
    ||||||||||||||||| ||||||  | ||||||||||||| |||||||||||||| || ||||||   | ||||||| || ||||||||||||||||||    
T  26034388 cctgttctaaattatcctgaatttcacgatttacatcatctgaagttcattcttccatgtttcaactcaaatcttctggtccacgtgcttgagaaatgcc 26034487  T
Q  345 atatgcttcaagttctcttaattcagagtagcaaggt 381  Q
      ||||||||||||||| |||||||||| | ||||||    
T  26034488 gcatgcttcaagttctcataattcagagcaacaaggt 26034524  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 24942490 - 24942579
Alignment:
Q  283 tctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagag 372  Q
    ||||||||| ||||| |||||||| |||  || |||| |||| ||| |||||||||||||||||||||||||||||||  ||||||||||    
T  24942490 tctaaagttgattctaccctgctttaactcgaatcttttgctaaacatgcttgagaaatgccatatgcttcaagttcttataattcagag 24942579  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 372
Target Start/End: Original strand, 25923749 - 25923901
Alignment:
Q  220 gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtctt 319  Q
    ||||||||||||| ||||||   ||||||||||| |||||||||||||| || | ||| ||||| ||||||||||||| || |||||||||  || ||||    
T  25923749 gtacaagcagtggacacttcatgcccctgttctagattatccagaatttcgccaattaaatcatataaagttcattctcccttgcttcaactcgaatctt 25923848  T
Q  320 ctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagag 372  Q
    ||  |||  |||||  | |||||  |||||||| || ||||| ||||||||||    
T  25923849 cttgtcactgtgctccataaatgtgatatgcttaaatttctcataattcagag 25923901  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 20506819 - 20506943
Alignment:
Q  20 gaggaagcatattttgatgtcttttccctccgtggaagagaatttatggaccctgtgctcagacacctccgagata---atggtgatatacatctactta 116  Q
    |||||||||||| ||||| | |||||| |  ||| ||| |||||||| |||||| |||||| | |||||||||||    |||||||| |||||||||||     
T  20506819 gaggaagcatatcttgattttttttccttgtgtgaaagtgaatttatcgaccctatgctcaaatacctccgagatctagatggtgatttacatctacttc 20506918  T
Q  117 tgcgtcatttcacatcaaaggtgaa 141  Q
    |||||||||  ||||||||||||||    
T  20506919 tgcgtcattcgacatcaaaggtgaa 20506943  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 342
Target Start/End: Original strand, 26038248 - 26038369
Alignment:
Q  221 tacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttc 320  Q
    |||| ||||||||||||||    ||||||| | ||||||||||||||| ||  |||| | ||||||||||||| ||||||||| || |||   | | |||    
T  26038248 tacatgcagtggccacttcaagtccctgttattaattatccagaatttcgctctttagaacatctaaagttcactcttccctgttttaactcaactattc 26038347  T
Q  321 tgctcaacgtgcttgagaaatg 342  Q
    || |||||||||||||||||||    
T  26038348 tggtcaacgtgcttgagaaatg 26038369  T

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Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 229 - 384
Target Start/End: Original strand, 17772753 - 17772908
Alignment:
Q  229 gtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttctgctcaac 328  Q
    |||||||||| |||||||  |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  || |||||||||   |    
T  17772753 gtggccactttgcacccccattctaaattatccagaatttcgcaatttaaatcatctaaagttcattcttccctgcttcaactcgaatcttctgctgggc 17772852  T
Q  329 gtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttg 384  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  17772853 gtgcttgagaaatgccacatgcttcaagttctcctaattcagagttgcaaggtttg 17772908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 17772547 - 17772670
Alignment:
Q  20 gaggaagcatattttgatgtcttttccctccgtggaagagaatttatggaccctgtgctcagacacctccgaga---taatggtgatatacatctactta 116  Q
    |||||||||||| |||||||||||||||| |||| ||| |||||| | |||||| ||||||| | ||||||| |    ||   |||| |||||||||||     
T  17772547 gaggaagcatatcttgatgtcttttccctgcgtgaaagtgaatttgtcgaccctatgctcagcctcctccgaaagagaaaccatgatttacatctacttt 17772646  T
Q  117 tgcgtcatttcacatcaaaggtga 140  Q
    |||||||||  |||||||||||||    
T  17772647 tgcgtcattcgacatcaaaggtga 17772670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 384
Target Start/End: Original strand, 36162394 - 36162557
Alignment:
Q  221 tacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttc 320  Q
    |||| |||||||||| |||   ||||||||||| ||||||| |||||| || ||||||||||| | ||||| |||||||  || || |||   | ||| |    
T  36162394 tacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttctatgttttaactcaaatctgc 36162493  T
Q  321 tgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttg 384  Q
    ||  | | || |||||| ||||||| ||||||||||||||| |||||||||| | |||||||||    
T  36162494 tgggccatgttcttgagcaatgccacatgcttcaagttctcataattcagagcaacaaggtttg 36162557  T

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