View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_18 (Length: 442)
Name: NF17216_low_18
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 37937813 - 37937388
Alignment:
| Q |
10 |
agtagcataggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctcttaacgct |
109 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937813 |
agtaacattggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctcttaacgct |
37937714 |
T |
|
| Q |
110 |
gaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaatcgtgcac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37937713 |
gaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaatcgttcac |
37937614 |
T |
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| Q |
210 |
atgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatccacctttttacaggtcttcatttcta------ttttact |
303 |
Q |
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| T |
37937613 |
atgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatctacctttttacaggtcttcatttctatttctgttttact |
37937514 |
T |
|
| Q |
304 |
c-nnnnnnncgtcgttaattggtttctgaacaactattttggtctctcaacgtgtgtgatgtcttgtcattatag-ttttttagtgtatccaaattaaaa |
401 |
Q |
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| T |
37937513 |
ctttttttccgtcgttaattggtttctgaacaactattttggtctctcaacgtgtgtgatgtgttgtcattatagtttttttagtgtatccaaattaaaa |
37937414 |
T |
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| Q |
402 |
ttactgacacatactcagtggtgtct |
427 |
Q |
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| T |
37937413 |
ttactaacatatactcggtggtgtct |
37937388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 37922539 - 37922264
Alignment:
| Q |
10 |
agtagcataggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctcttaacgct |
109 |
Q |
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|||| ||| ||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| | |||| || || |||||| |
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| T |
37922539 |
agtaacattggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgct |
37922440 |
T |
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| Q |
110 |
gaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaatcgtgcac |
209 |
Q |
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| T |
37922439 |
gacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgccacacgacacaatcgtgcac |
37922340 |
T |
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| Q |
210 |
atgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatccacctttttacaggt |
285 |
Q |
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| T |
37922339 |
atgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggt |
37922264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 37926113 - 37925847
Alignment:
| Q |
19 |
ggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctcttaacgctgaccccacc |
118 |
Q |
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||||||||| ||||||||| |||||||| | |||| ||||| |||||| | || |||||||||||||| || ||||||| ||||||||||| || || |
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| T |
37926113 |
ggtgctggtaaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaacttaacgctgatccaact |
37926014 |
T |
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| Q |
119 |
gccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaatcgtgcacatgttattg |
218 |
Q |
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|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || ||||||||||||||||||||| |
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| T |
37926013 |
gcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaatcgtgcacatgttattg |
37925914 |
T |
|
| Q |
219 |
ctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatccacctttttacaggt |
285 |
Q |
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|||| |||||||||||||||||||| || || |||||||| |||||||| |||||||| |||||||| |
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| T |
37925913 |
ctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggt |
37925847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 273
Target Start/End: Original strand, 26285068 - 26285317
Alignment:
| Q |
24 |
tggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctcttaacgctgaccccaccgcctt |
123 |
Q |
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||||||||||||| || || |||||| ||| || |||||||| | ||||| |||||||||||||| |||||||||||| | |||| || || | | |
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| T |
26285068 |
tggtgaatctagctggaataatggaaaaagcagacgaatcattacttcctggtgtatacaaagaagttggtgctgctcttcatactgatcctacaggact |
26285167 |
T |
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| Q |
124 |
aggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaatcgtgcacatgttattgctctt |
223 |
Q |
| |
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||||| || ||||| || ||||| |||||||||| | |||||||| |||| | || |||||||| ||| | |||||||| ||||||||||||||| |
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| T |
26285168 |
cggttcgcttactctctttcgatccattgttcaatcttcttgttacccaattgccgcgtatctcgccacgcgtcataatcgtgctcatgttattgctctt |
26285267 |
T |
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| Q |
224 |
ggtgcttttctttgggctgccgctacgttcctcgttgccatctcatccac |
273 |
Q |
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|||||||||||||||||||| ||||| || || |||||| |||| ||||| |
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| T |
26285268 |
ggtgcttttctttgggctgctgctacttttcttgttgccttctcctccac |
26285317 |
T |
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