View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17216_low_20 (Length: 431)
Name: NF17216_low_20
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 24867759 - 24868158
Alignment:
| Q |
15 |
tatgaaagagttctttagtgatccaataaaccgtgaaaaaaggagcatggccatgcaaggtcattttcatcctttgaaatagcctgtttattataacatt |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || |
|
|
| T |
24867759 |
tatgaaagatttctttagtgatccaataaaccgtgaaaaaaggagcatggccatgcaaggtcactttcatcctttgaaatagcctgtttattttaacttt |
24867858 |
T |
|
| Q |
115 |
tgagaggtctcgaacag-atactagtagcccatgagatgtctggtcagtattaagagttcggccttgttacctcaagtaacagggttcaaatcctcgtgg |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24867859 |
tgagaggtctcgaacaggatactagtagcccatgagatgtctggtcagtattaagagttcggccttgttacctcaagtgacagggttcaaatcctcgtgg |
24867958 |
T |
|
| Q |
214 |
actactagtaaacaagagaaactttcatttacttccacttccatcatgcatggttgaaattcaattacatgaacatttcattcctattctaatgcaggtg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24867959 |
actactagtaaacaagagaaactttcatttacttccacttccatcatgcatggttgaaattcaattacatgaacatttcattcctattctaatgcaggtg |
24868058 |
T |
|
| Q |
314 |
tgaaattctattgtcaaaactgtggacgtgaaggacataggagacactactgtccagaactgaaggacggtttgattgatcggcgattcacatgtagact |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24868059 |
tgaaattctattgtcaaaactgtggacgtgaaggacataggagacactactgtccagaactaaaggatggtttgattgatcggcgattcacatgtagact |
24868158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University