View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_21 (Length: 414)
Name: NF17216_low_21
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 5299922 - 5299540
Alignment:
| Q |
16 |
caaaggatgcggctaaactttgatatgtcatttggaaatgtagttatcacttggtatgtgcaactatcaatacattgatacaaatgattgtttccttttg |
115 |
Q |
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| T |
5299922 |
caaaggatgtggctaaactttgatatgtcatttggaaatgtagttatcacttggtatgtgcaactatcaatacattgatacaaatgattgtttccttttg |
5299823 |
T |
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| Q |
116 |
ttgatttgtagagcaaggaaaagagtataatagaggtgtcacaaattagttgaaattattgtctattttcaccccacatgattcctccgtcgatataatt |
215 |
Q |
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| T |
5299822 |
ttgatttgtagagcaaggaaaagagtataatagaggtgtcacaaattagttgaaattattgtctattttcaccccacatgattcctccgtcaatataatt |
5299723 |
T |
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| Q |
216 |
ttgttcgagatacagtagaggtgtcacatgtcccttaacttgtgtgatttgtaatgaggcaatttagaacagctaccaccttttcttccattgtttgaca |
315 |
Q |
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| T |
5299722 |
ttgttcgagatacagtagaggtgtcacatgtcccttaacttgtatgatttgtaatgaggcaatttagaacagctaccaccttttcttccattgtttgaca |
5299623 |
T |
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| Q |
316 |
gcggctaacgtatggcacgcaagtggagtttggagcaggcttgagcctttggttcagcaatatcaaagtgcggaagatgtaat |
398 |
Q |
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| T |
5299622 |
gcggctaacgtatggcgcgcaagtggagtttggagcaggcttgagcctttggttcagcaatatcaaagtgcggaagatgtaat |
5299540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 8860933 - 8860871
Alignment:
| Q |
336 |
aagtggagtttggagcaggcttgagcctttggttcagcaatatcaaagtgcggaagatgtaat |
398 |
Q |
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| T |
8860933 |
aagtggagtttggagcagtcttgagcctttggttcagcaatatcaaagtgtggaggatgtaat |
8860871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 398
Target Start/End: Original strand, 34273659 - 34273804
Alignment:
| Q |
253 |
acttgtgtgatttgtaatgaggcaatttagaacagctaccaccttttcttccattgtttgacagcggctaacgtatggcacgcaagtggagtttggagca |
352 |
Q |
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| T |
34273659 |
acttgtgtggtgtgtaacgaggcaaacgaggacagctaccatctttttttccaatgttcgacagcagtcaacatatggcaatcaagtggactttggatca |
34273758 |
T |
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| Q |
353 |
ggcttgagcctttggttcagcaatatcaaagtgcggaagatgtaat |
398 |
Q |
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| T |
34273759 |
gccttgatcctttggtacaacaataacacattgtggaagatgtaat |
34273804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 20667355 - 20667404
Alignment:
| Q |
97 |
aaatgattgtttccttttgttgatttgtagagcaaggaaaagagtataata |
147 |
Q |
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| T |
20667355 |
aaatgattgtttccttc-gctgatttgtagagcaaggaaatgagtataata |
20667404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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