View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_24 (Length: 369)
Name: NF17216_low_24
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 35831445 - 35831105
Alignment:
| Q |
18 |
aggttcagccaaggatggtgaacttcccataagccttgtgctcttagcttcttctcagaaacatgcactctgtctaaaaattccacgtaggaaacttctg |
117 |
Q |
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| T |
35831445 |
aggttcagccaaggatggtgaacttcccataagccttgtgctcttagcttcttctcagaaacatgcactctgtctaaaaattccacgtaggaaacttctg |
35831346 |
T |
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| Q |
118 |
ataggaagagtgtgggtggaatataactcaattgtgacagtaggtgatcaacatcctgcatttaaatgagtnnnnnnntgttaagttgttcacagaacta |
217 |
Q |
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| T |
35831345 |
ataggaagagtgtgggtggaatataactcaattgtgacagtaggtgatcaacatcctgcatttaaatgagtaaaaaaatgttaagttgttcacagaacta |
35831246 |
T |
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| Q |
218 |
atgctgtaaacctgaatatgagattgagtgcatatttggattgacggtgagaatgaggaaatcacggcgggccaccacaatttatttcggnnnnnnntac |
317 |
Q |
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| T |
35831245 |
atgctgtaaacctgaatatgagattgagtgcatatttggattgacggtgagaatgaggaaatcacggcgggccaccacaatttatttcggaaaaaaatac |
35831146 |
T |
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| Q |
318 |
actttagagcttctacaaaatcacagcgtcaccgtaatttc |
358 |
Q |
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| T |
35831145 |
actttagagcttctacaaaatcacagtgtcaccgtaatttc |
35831105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 31464818 - 31464765
Alignment:
| Q |
315 |
tacactttagagcttctacaaaatcacagcgtcaccgtaatttcatcaaactca |
368 |
Q |
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| T |
31464818 |
tacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcatcaaactca |
31464765 |
T |
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