View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_25 (Length: 365)
Name: NF17216_low_25
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 39993580 - 39993925
Alignment:
| Q |
6 |
aagaatataaacaacaatttaatacagtttcagacaaaattgaattacacaactcaaaagtacaaaatccatgtcatgaatatacacactcaccgtgagg |
105 |
Q |
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| T |
39993580 |
aagaaaataaacaacaatttaatacagtttcagacaaaattgaattacacaactcaaaagtacaaaatccatgtcatgaatatacacactcaccgtgagg |
39993679 |
T |
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| Q |
106 |
ctcttttgcattacagaattcacatcttcaggcaagatcgaagttatgactatgacttttctctcaatatctttaccttgccaagagtacaatactcgtt |
205 |
Q |
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| T |
39993680 |
ctcttttgcattacaaaattcacatcttcaggcaagatcgaagttatgactatgacttttctctcaatatctttaccttgccaagagtacaatactcgtt |
39993779 |
T |
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| Q |
206 |
cgcttaaaacatctgaaatcattacatctgcaaatcaacaatcaaataattgtcaatgcatgttttcaacaagaaaagaaaaaatgtctatgtatgtata |
305 |
Q |
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| T |
39993780 |
cgcttaaaacatccgaaatcattacatctgcaaatcaacaatcaaataattgtcaatgcatgttttcaacaagaaaagaaaaaatgtctttgtatatatg |
39993879 |
T |
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| Q |
306 |
tat-taattttg-atacactagtgtaaaaagttctgcactatcagc |
349 |
Q |
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| T |
39993880 |
tatgtatgtatgtatacactagtgtaaaaagttctgcactatcagc |
39993925 |
T |
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