View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17216_low_26 (Length: 365)
Name: NF17216_low_26
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 92 - 359
Target Start/End: Complemental strand, 30842038 - 30841773
Alignment:
| Q |
92 |
gagacatcatttatgttgcttatttattgagaacagttcagaatagagagtagaaccatggaagagataaaaaacccctcaggaacttctcttctggtac |
191 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||| |||||| || ||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
30842038 |
gagacatcatctatgttgcttatttattgagaacaattcagaatatagagta--acaatggaagagatcaagaacccctctggaacttctcttctggtac |
30841941 |
T |
|
| Q |
192 |
catcagtccaagagttggctaaggaaaaaatttcgacagttccagcaagatatattcagtctcaacatgaaggattggtcatcaatgaagctaatagtat |
291 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30841940 |
catcagtccaagaattggctaaggaaaagatttcaacagttccagcaagatatattcagtctcaacatgaagaattggtcatcaatgaagctaatagtat |
30841841 |
T |
|
| Q |
292 |
acttgaaattccagttattgatatgaagaaattgctttctttagaatatgggagtttagaattatcta |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30841840 |
acttgaaattccagttattgatatgaagaaattgctttctttagaatatgggagtttagaattgtcta |
30841773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 114 - 359
Target Start/End: Complemental strand, 30854531 - 30854286
Alignment:
| Q |
114 |
tttattgagaacagttcagaatagagagtagaaccatggaagagataaaaaacccctcaggaacttctcttctggtaccatcagtccaagagttggctaa |
213 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30854531 |
tttagtgagaacaattcagaatatagagtagaaccatggaagagatcaagaacccctctggaacttctcttctggtaccatcagttcaagagttggctaa |
30854432 |
T |
|
| Q |
214 |
ggaaaaaatttcgacagttccagcaagatatattcagtctcaacatgaaggattggtcatcaatgaagctaatagtatacttgaaattccagttattgat |
313 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30854431 |
ggaaaaaatttcaacagttccaccaagatatattcagtctcaacacgatgaattggtcatcaatgaagctaatagtatacttgaaattccagttattgat |
30854332 |
T |
|
| Q |
314 |
atgaagaaattgctttctttagaatatgggagtttagaattatcta |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30854331 |
atgaagaaattgctttctttagaatatgggagtttagaattgtcta |
30854286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 30831302 - 30831219
Alignment:
| Q |
170 |
tcaggaacttctcttctggtaccatcagtccaagagttggctaagga---aaaaatttcgacagttccagcaagatatattcag |
250 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| ||||| || ||| ||||| || |||||| ||||||| |||||| |
|
|
| T |
30831302 |
tcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcag |
30831219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University