View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_27 (Length: 349)
Name: NF17216_low_27
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_27 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 140 - 349
Target Start/End: Complemental strand, 37632361 - 37632152
Alignment:
| Q |
140 |
tcctactcattcacacttcactcttcttcttttccatttctgcaattgtgaaacaaaccctaatcccacaatccaatggcacccaaatcccaaacccgct |
239 |
Q |
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| T |
37632361 |
tcctacccattcacacttcactcttcttcttttccatttctgcaattgtgaaacaaaccctaatcccacaatccaatggcacccaaatcccaaacccgct |
37632262 |
T |
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| Q |
240 |
cttcctccgccgcctctgaattcttcaaacccggcaccttagtcgaaatcagctccgacgacgacggtttccgcggctcatggttcaccggcaagatcgt |
339 |
Q |
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| T |
37632261 |
cttcctccgccgcctctgaattcttcaaacccggcaccttagtcgaaatcagctccgacgacgacggtttccgcggctcatggttcaccggcaagatcgt |
37632162 |
T |
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| Q |
340 |
ccgccgtctc |
349 |
Q |
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|||||||||| |
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| T |
37632161 |
ccgccgtctc |
37632152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 37632497 - 37632386
Alignment:
| Q |
10 |
agaatatgaaaacaagggtagattagtaacagtagatttgaaaatgaaattaagatagcataataaagccatgaacacattcttaattcccgctaaacaa |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37632497 |
agaaaatgaaaacaagggtagattagtaacagtagatttgaaaatgaaattaagatagcataataaagccatgaacacattcttaattcccgctaaacaa |
37632398 |
T |
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| Q |
110 |
cactatacaaag |
121 |
Q |
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| T |
37632397 |
cactatacaaag |
37632386 |
T |
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