View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17216_low_3 (Length: 974)

Name: NF17216_low_3
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17216_low_3
NF17216_low_3
[»] chr5 (1 HSPs)
chr5 (27-955)||(5493225-5494153)


Alignment Details
Target: chr5 (Bit Score: 905; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 905; E-Value: 0
Query Start/End: Original strand, 27 - 955
Target Start/End: Complemental strand, 5494153 - 5493225
Alignment:
Q  27 aaccttcctccgacaacattccattcttccatgaatatccagacgcaccaccgtcgaatcagaatcaagcagcaccgttaacttctaacgccacaacagc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5494153 aaccttcctccgacaacattccattcttccatgaatatccagacgcaccaccgtcgaatcagaatcaagcagcaccgttaacttctaacgccacaacagc 5494054  T
Q  127 gaatccaacggcaacacaacctgcaaaaggaacaaagaaagtagcaatagcaatctccgttggaatcgtaacgttaggaatgttgtcggcgttagctttc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5494053 gaatccaacggcaacacaacctgcaaaaggaacaaagaaagtagcaatagcaatctccgttggaatcgtaacgttaggaatgttgtcggcgttagctttc 5493954  T
Q  227 tttttatacaaacacagagcaaaaaacgccgcggatacacagaagctagtgagtaataccacacagaggaacaattctcttcaagattcatcgaattcat 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5493953 tttttatacaaacacagagcaaaaaacgccgcggatacacagaagctagtgagtactaccacacagaggaacaattctcttcaagattcatcgaattcat 5493854  T
Q  327 ctgctccggtagtagcttcgaattttctctacattggaactgtggaaccttcgagaaggtcaacgacggtcaacgatcagaatcaaacggagaagcctaa 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493853 ctgctccggtagtagcttcgaattttctctacattggaactgtggaaccttcgagaaggtcaacgacggtcaacgatcagaatcaaacggagaagcctaa 5493754  T
Q  427 ccgttcaccgtatcataaactgaattccgttaagcgatccgatcggtatcggccgagtccagagttacagccaatgccgccgttgagtaaacctccgaac 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  5493753 ccgttcaccgtatcataaactgaattccgttaagcgatccgatcggtatcgtccgagtccggagttacagccaatgccgccgttgagtaaacctccgaac 5493654  T
Q  527 ggaaacattccgccggcgatgtcgtcggaagaagattccgatgaagaaagtaacgaaacagcgttccattcgccgcagaattcttcagtaagtcaggaag 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493653 ggaaacattccgccggcgatgtcgtcggaagaagattccgatgaagaaagtaacgaaacagcgttccattcgccgcagaattcttcagtaagtcaggaag 5493554  T
Q  627 atggattttacacgccgtattcagtttcacggcagagttctctcagtaacggtagtccggcgaaaaaagagagtaattcgacggttacgccgcttccgaa 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  5493553 atggattttacacgccgtattcagtttcacggcagagttctctcagtaacggtagtccggcgaagaaagagagtaattcgacggttacgccgcttcctaa 5493454  T
Q  727 atcgaagagaacttcaccgaaatcgaaatctgctctttctgcttcttctccggatattcgacacgtcatcattccttctatcaaacaaacaccactgccg 826  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493453 atcgaagagaacttcaccgaaatcgaaatctgctctttctgcttcttctccggatattcgacacgtcatcattccttctatcaaacaaacaccactgccg 5493354  T
Q  827 caacgtcagcaatcggagaaacagttaacctcctccggtggaataggacattcaagaaaaccgaaattctcagcaccaccaccaccgccgaatttggctc 926  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5493353 caacgtcagcaatcggagaaacagttaacctcctccggtggaataggacattcaagaaaaccgaaattctcagcaccaccaccaccgccgaatttggttc 5493254  T
Q  927 atcttcaatcaacaactaatacagtttca 955  Q
    |||||||||||||||||||||||||||||    
T  5493253 atcttcaatcaacaactaatacagtttca 5493225  T

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