View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17216_low_30 (Length: 344)
Name: NF17216_low_30
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 23869632 - 23869959
Alignment:
| Q |
1 |
atgaatacattgttcaaacttaattctatattgtgatttgtaaagggggaatgaaacatttcaattctatgttttgccacaattttatccctttcaaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23869632 |
atgaatacattgttcaaacttaattctatattgtgatttgtaaagggggaatgaaacatttcaattctatgttttggcacaattttatccctttcaaagc |
23869731 |
T |
|
| Q |
101 |
atgtttttgcttggcgcatgatcttaaaaagagttaaacccaaaactaatttagattgtgtcgatcacctatttttgaatttctgctaaaattagttggg |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23869732 |
atatttttgcttggcgcatgatcttaaaaagagttaaacccaaaactaatttagattgtgtcgatcacctacttttgaatttctgctaaaattagttggg |
23869831 |
T |
|
| Q |
201 |
agttagcattgtgttttcgaaagagggcaggagtcatttaagttctttctcaggtatagtgcagtcactcctcactccccagtctcctaaaatggctctg |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23869832 |
agttagcatagtgttttcgaaagagggcaggagtcatttaagttctttctcaggtatagtgcagtcactcctcactccccagtctcctaaaatggctctg |
23869931 |
T |
|
| Q |
301 |
ctcaccgacgacccacaaaccaaacaac |
328 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
23869932 |
ctcaccgacgacccacaaacaaaacaac |
23869959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 23452329 - 23452284
Alignment:
| Q |
283 |
tctcctaaaatggctctgctcaccgacgacccacaaaccaaacaac |
328 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23452329 |
tctcctaaaatgtctctgctcaccgacgacccacaaaccaaacaac |
23452284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University