View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17216_low_33 (Length: 320)

Name: NF17216_low_33
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17216_low_33
NF17216_low_33
[»] chr1 (3 HSPs)
chr1 (193-295)||(39864510-39864614)
chr1 (208-297)||(16632188-16632277)
chr1 (187-245)||(43671317-43671376)
[»] chr4 (4 HSPs)
chr4 (18-65)||(5112994-5113041)
chr4 (187-234)||(22910942-22910990)
chr4 (187-234)||(22967532-22967580)
chr4 (187-237)||(16207135-16207187)
[»] chr3 (2 HSPs)
chr3 (18-63)||(55233076-55233121)
chr3 (187-237)||(47278211-47278264)
[»] chr8 (1 HSPs)
chr8 (208-247)||(37045102-37045141)
[»] chr6 (3 HSPs)
chr6 (189-245)||(13499236-13499294)
chr6 (189-235)||(19292815-19292863)
chr6 (191-254)||(19078846-19078910)
[»] chr5 (2 HSPs)
chr5 (188-254)||(4616627-4616693)
chr5 (208-258)||(20645724-20645774)
[»] scaffold0006 (1 HSPs)
scaffold0006 (189-235)||(230434-230482)


Alignment Details
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 39864614 - 39864510
Alignment:
Q  193 atatgaagaattcg-caaaaaatataaaaagagggtgccatgggattcgaacacgcgaccttttactgataaaaaa-tttacataaccgctgcaacacaa 290  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||   | |||||||| |||||||| |    
T  39864614 atatgaagaattcgtcaaaaaatataaaaagagggtgccatggggttcaaacacgcgaccttttactggtaaaaaagacttcataaccgttgcaacacca 39864515  T
Q  291 gcata 295  Q
    |||||    
T  39864514 gcata 39864510  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 208 - 297
Target Start/End: Original strand, 16632188 - 16632277
Alignment:
Q  208 aaaaaatataaaaagagggtgccatgggattcgaacacgcgaccttttactgataaaaaatttacataaccgctgcaacacaagcatata 297  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||  |||||||||| || |||||| ||||||||    
T  16632188 aaaaaatataaaaagagggtgtcatggggttcgaacatgcgaccttttaccgataaaaagattacataaccactacaacaccagcatata 16632277  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 43671317 - 43671376
Alignment:
Q  187 tataaaatatgaagaattcg-caaaaaatataaaaagagggtgccatgggattcgaacac 245  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  43671317 tataaaatatgaagaattaatcaaaaaatataaaaagagggtgccatgggattcgaacac 43671376  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 5113041 - 5112994
Alignment:
Q  18 ggaatggcctcctggagtcagaaggctccactgaataatcctctccag 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5113041 ggaatggcctcctggagtcagaaggctccactgaataatcctctccag 5112994  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 22910942 - 22910990
Alignment:
Q  187 tataaaatatgaagaattcg-caaaaaatataaaaagagggtgccatgg 234  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22910942 tataaaatatgaagaattcgtcaaaaaatataaaaagagggtgccatgg 22910990  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 22967580 - 22967532
Alignment:
Q  187 tataaaatatgaagaattcg-caaaaaatataaaaagagggtgccatgg 234  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22967580 tataaaatatgaagaattcgtcaaaaaatataaaaagagggtgccatgg 22967532  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 16207187 - 16207135
Alignment:
Q  187 tataaaatatgaagaattcgc--aaaaaatataaaaagagggtgccatgggat 237  Q
    ||||||||||||||||||||   |||||||||||||||||||||||| |||||    
T  16207187 tataaaatatgaagaattcggtgaaaaaatataaaaagagggtgccaagggat 16207135  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 55233076 - 55233121
Alignment:
Q  18 ggaatggcctcctggagtcagaaggctccactgaataatcctctcc 63  Q
    |||||||||||||||||||||  || ||||||||||||||||||||    
T  55233076 ggaatggcctcctggagtcagctggttccactgaataatcctctcc 55233121  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 47278211 - 47278264
Alignment:
Q  187 tataaaatatgaagaattcgc---aaaaaatataaaaagagggtgccatgggat 237  Q
    ||||||||||||||||||||    |||||||||||||||||||||||| |||||    
T  47278211 tataaaatatgaagaattcgatgaaaaaaatataaaaagagggtgccaagggat 47278264  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 37045141 - 37045102
Alignment:
Q  208 aaaaaatataaaaagagggtgccatgggattcgaacacgc 247  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  37045141 aaaaaatataaaaagagagtgccatggggttcgaacacgc 37045102  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 13499294 - 13499236
Alignment:
Q  189 taaaatatgaagaattcgca--aaaaatataaaaagagggtgccatgggattcgaacac 245  Q
    |||||||||||||||||||   |||||||| |||||||||||||||||| ||| |||||    
T  13499294 taaaatatgaagaattcgctggaaaaatatgaaaagagggtgccatggggttcaaacac 13499236  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 19292815 - 19292863
Alignment:
Q  189 taaaatatgaagaattcgca--aaaaatataaaaagagggtgccatggg 235  Q
    |||||||||||||||||||   ||||||||||||| |||||||||||||    
T  19292815 taaaatatgaagaattcgctggaaaaatataaaaaaagggtgccatggg 19292863  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 19078846 - 19078910
Alignment:
Q  191 aaatatgaagaattcgcaaaa-aatataaaaagagggtgccatgggattcgaacacgcgaccttt 254  Q
    ||||||||||||||| | ||  |||||||| |||||||||||||||  ||||||| |||||||||    
T  19078846 aaatatgaagaattctctaagtaatataaatagagggtgccatggggatcgaacatgcgaccttt 19078910  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 4616627 - 4616693
Alignment:
Q  188 ataaaatatgaagaattcgc-aaaaaatataaaaagagggtgccatgggattcgaacacgcgaccttt 254  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||| | ||| ||||| || |||||    
T  4616627 ataaaatatgaagaattcgctaaaaaatataaaaaga-ggtgccatgaggttcaaacacacgtccttt 4616693  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 20645724 - 20645774
Alignment:
Q  208 aaaaaatataaaaagagggtgccatgggattcgaacacgcgaccttttact 258  Q
    ||||| |||||||||||||||||||| | |||||||| |||| ||||||||    
T  20645724 aaaaagtataaaaagagggtgccatgtggttcgaacatgcgaacttttact 20645774  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 230482 - 230434
Alignment:
Q  189 taaaatatgaagaattcgca--aaaaatataaaaagagggtgccatggg 235  Q
    |||||||| ||||||||||   |||||||||||||||||||||||||||    
T  230482 taaaatataaagaattcgctggaaaaatataaaaagagggtgccatggg 230434  T

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