View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_35 (Length: 315)
Name: NF17216_low_35
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 14722689 - 14722401
Alignment:
| Q |
11 |
taagaatatatggagttcttctattcctccttctaaatctcttttgttttggaggctgtttcattacaaagttcctattgatgataatttaacggttaaa |
110 |
Q |
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| T |
14722689 |
taagaatatatggagttcttctattcctccttctaaatctcttttgttttggaggctgtttcattacaaagttcctattgatgataatttaacggttaaa |
14722590 |
T |
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| Q |
111 |
ggttacaaccccatgtgttgcttgctcgcgttgcaagcatgaagaatctaacaatcatttgttttttcgattgtgattttgcaggtcaattttcatgtta |
210 |
Q |
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| T |
14722589 |
ggttacaaccccatgtgttgcttgctcgcgttgcaagcatgaagaatctaacaatcatttgttttttcgattgtgattttgcaggtcaattttcatgtta |
14722490 |
T |
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| Q |
211 |
gattatttaccttttcaatatgcatacggacaccggtaacatgtatactgtgaatgagctttgtaataaatcttggtcatcgtaatgtg |
299 |
Q |
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| T |
14722489 |
gattatttaccttttcaatatgcatacggacaccggtaacatgtatactgtgaatgagctttgtaataaatcttggtcatcgtaatgtg |
14722401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 17601503 - 17601791
Alignment:
| Q |
11 |
taagaatatatggagttcttctattcctccttctaaatctcttttgttttggaggctgtttcattacaaagttcctattgatgataatttaacggttaaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17601503 |
taagaatatatggagttcttctattcctccttctaaatctcttttattttggaggctgtttcattacaaagttcctattgatgataatttaacggttaaa |
17601602 |
T |
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| Q |
111 |
ggttacaaccccatgtgttgcttgctcgcgttgcaagcatgaagaatctaacaatcatttgttttttcgattgtgattttgcaggtcaattttcatgtta |
210 |
Q |
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| T |
17601603 |
ggttacaaccccatgtgttgcttgctcgcgttgcaagcatgaagaatctaacaatcatttgttttttcgattgtgattttgcaggtcaattttcatgtta |
17601702 |
T |
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| Q |
211 |
gattatttaccttttcaatatgcatacggacaccggtaacatgtatactgtgaatgagctttgtaataaatcttggtcatcgtaatgtg |
299 |
Q |
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| T |
17601703 |
gattatttaccttttcaacatgcatacggacaccggtaacatgtatactgtgaatgagctttgtaataaatcttggtcatcgtaatgtg |
17601791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 295
Target Start/End: Complemental strand, 39049607 - 39049466
Alignment:
| Q |
152 |
aagaatctaacaatcatttgttttttcgattgtgattttgcaggtcaattttcatgttagattatttaccttttcaatatgcatacggacaccggtaaca |
251 |
Q |
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||||||||||||| |||||||||||| || ||||| |||||||||||| |||| ||| ||||| || | |||| |||||| | | ||||||| |||| |
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| T |
39049607 |
aagaatctaacaaacatttgtttttt-gaatgtgactttgcaggtcaa-cttcaggttggattactttcatttttaatatgtagatggacaccagtaatg |
39049510 |
T |
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| Q |
252 |
tgtatactgtgaatgagctttgtaataaatcttggtcatcgtaa |
295 |
Q |
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| T |
39049509 |
tgcatattgtgattaaaatttgtaataaatcttgatcattgtaa |
39049466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 14150899 - 14150967
Alignment:
| Q |
34 |
ttcctccttctaaatctcttttgttttggaggctgtttcattacaaagttcctattgatgataatttaa |
102 |
Q |
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||||||||||||||||||||||| || || | |||| ||| ||||| |||||| | |||||||||||| |
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| T |
14150899 |
ttcctccttctaaatctcttttggttcggtcgttgttccataacaaatttcctactaatgataatttaa |
14150967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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