View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_36 (Length: 289)
Name: NF17216_low_36
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 30357120 - 30357401
Alignment:
| Q |
1 |
cttagaacctagccatcatactaagaaataagcaatgtgtgttgataattcctcataacatgtttacaatgtttgaatgggcttgcgggaactaagaaac |
100 |
Q |
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| T |
30357120 |
cttagaacctagccatcatactaagaaataagcaatgtgtgttgataattcctcataacatgtttacaatgtttgaatggggttgcgggaactaagaaac |
30357219 |
T |
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| Q |
101 |
gaataaagggattttgatttgtttggtttattatgatatggcttatttctaaagcaaggaatgatattattttttcttcaaacaggagcaaagaaccttt |
200 |
Q |
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| T |
30357220 |
gaataaagggattttgatttgtttggtttattatgatatggcttatttctaaagcaaggaatgatattattttttcttcaaacaggagcaaagaaccttt |
30357319 |
T |
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| Q |
201 |
gttgtcaaggtggagtttgaattggttaaatatgactcattatttgttttatggacgaacatgggagccttgatgatgatgt |
282 |
Q |
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| T |
30357320 |
gttgtcaaggtggagtttgaattggttaaatatgactcattgtttgttttatgatcgaacatgggagccttgatgatgatgt |
30357401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 30354729 - 30354835
Alignment:
| Q |
43 |
tgataattcctcataacatgtttacaatgtttgaatgggcttgcgggaactaagaaacgaataaagggattttgatttgtttggtttattatgatatggc |
142 |
Q |
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|||||| ||||||||||||||| |||||||||||||||| || | |||||||||||| || |||||||||| ||||| ||||| ||| | |||| | |
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| T |
30354729 |
tgataaatcctcataacatgttcacaatgtttgaatggggttatgagaactaagaaacaaaggaagggattttcgtttgtctggttcattggggtatgtc |
30354828 |
T |
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| Q |
143 |
ttatttc |
149 |
Q |
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| T |
30354829 |
ttatttc |
30354835 |
T |
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