View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_39 (Length: 269)
Name: NF17216_low_39
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_39 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 44026634 - 44026378
Alignment:
| Q |
13 |
gaaaaagttgggaacagggtgttttctgtgagacttggacagtttagtaataatggattggaggatggtagtagtcctagtttggatgagagaagatgtt |
112 |
Q |
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| T |
44026634 |
gaaaaagttgggaaaagggtgttttctgtgagacttggaaagttcagaaataatggattggaggatggtagtagtcctagtttggatgagagaagatgtt |
44026535 |
T |
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| Q |
113 |
attcaatgggttcatatcaatatcatgttcttggtgattcaaatttgcaagtggttttgtcacaatcttgttgtgatgatgatgacttaagaagtgaaga |
212 |
Q |
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| T |
44026534 |
attcaatgggttcatatcaatatcatgttcttggtgattcaaatttgcaagtggttttgtcacaatcttgttgtgatgatgatgacttaagaagtgaaga |
44026435 |
T |
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| Q |
213 |
aagtgggaatgtggaggggaagaggatagggaacagaaccaaaggtgaaagtttttc |
269 |
Q |
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| T |
44026434 |
aagtgggaatgtggaggggaagaggatagggaacagaaccaaaggtgaaagtttttc |
44026378 |
T |
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