View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_4 (Length: 792)
Name: NF17216_low_4
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 19 - 783
Target Start/End: Original strand, 28128973 - 28129739
Alignment:
| Q |
19 |
atggagccatcagtttctgtccctaatgaaactgtaaccatgtttgttgccactgaaattgcagatctaaagctagacccacatggactcttagactcca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28128973 |
atggagccatcagtttctgtccctaatgaaactgtaaccatgtttgttgccactgaaattgcagatccaaagctagacccacatggactcttagactcca |
28129072 |
T |
|
| Q |
119 |
cataaggattctgcaataacatgttactaatcagtaatactatacttaaattaaaaatcaaccaatatcaaagttagcatatcacaaatgtcatttgtgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129073 |
cataaggattctgcaataacatgttactaatcagtaatactatacttaaattaaaaatcaaccaatatcaaagttagcatatcacaaatgtcatttgtgt |
28129172 |
T |
|
| Q |
219 |
cactctgaaattacattctatttttaagccgatttttatatacaacttcattaagttcttctaccnnnnnnnnngagagacttaagttcttctacttctt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28129173 |
cactctgaaattacattctatttttaagccgatttttatatacaacttcattaagttcttctacctttttttttgagagacttaagttcttctacttctt |
28129272 |
T |
|
| Q |
319 |
ctttactatac--atatatgtagtatatcatggacacttcagatagatagtgtgtgagtgtgtccattgttcgacatctatcagtgtccgactcaacaca |
416 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
28129273 |
ctttactatacatatatatgtagtatatcatggacacttcagatagatattgtgtgagtgtgtccattgttggacatctatcagtgtccgactcggcaca |
28129372 |
T |
|
| Q |
417 |
tgtagttaaattcaattacttcnnnnnnnaaataattattgttagtgtggtgtatagggtttgtatctatatcaatacttcgtagtacataacttggtgt |
516 |
Q |
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|||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28129373 |
tgtatttaaatttaattacttttttttttaaataattattgttagtgtggtgtctagggtttgtatctatatcaatacttcatagtacataacttggtgt |
28129472 |
T |
|
| Q |
517 |
catgaaannnnnnnnnnnnnnnnngtaaccatgtaattggggcatacacaccagcttttgtcgatgattaatctctgtagtggattctctccactcaaca |
616 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28129473 |
catgaaattttttatatcttttttgtaaccatgtaattggggcatacacaccagcttttgtcgatgattaaactctgtagtggattctctccactcaaca |
28129572 |
T |
|
| Q |
617 |
tgttttcattcagagcgttcaaacccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctctagcgcacc |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129573 |
tgttttcattcagagcgttcaaacccgagactttattttagagattaagagagagtgaagtgatgagtactaaccaatgcaaatccacctctagcgcacc |
28129672 |
T |
|
| Q |
717 |
aagtttttggcatggtggtagaacgagcgccataccactctgggagactagttttccccagaataat |
783 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129673 |
aagtttttggcatggtggtagaacgagcgccataccactctgggagactagttttccccagaataat |
28129739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 28110466 - 28110580
Alignment:
| Q |
19 |
atggagccatcagtttctgtccctaatgaaactgtaaccatgtttgttgccactgaaattgcagatctaaagctagacccacatggactcttagactcca |
118 |
Q |
| |
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|||||||||| |||||||||||| || ||||||| ||||||||| |||||||||||||| || ||| |||||||||| |||||||| | || |||| |
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| T |
28110466 |
atggagccatgagtttctgtccccaaagaaactgcaaccatgttagttgccactgaaatggcttatccaaagctagacgtgcatggactttcggattcca |
28110565 |
T |
|
| Q |
119 |
cataaggattctgca |
133 |
Q |
| |
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||||||| ||||||| |
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| T |
28110566 |
cataagggttctgca |
28110580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 780
Target Start/End: Original strand, 28114076 - 28114201
Alignment:
| Q |
662 |
taagagagagtga-agtgatgagtacta---accaatgcaaatccacctctagcgcaccaagtttttg---gcatggtggtagaacgagcgccataccac |
754 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||| || | |||| | | ||||||| ||||||||| |
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| T |
28114076 |
taagagagagtgatagtgatgagtactactaaccaagccaaatccacctctagggcaccaagcttgtcctagcatttttgaagaacgaatcccataccac |
28114175 |
T |
|
| Q |
755 |
tctgggagactagttttccccagaat |
780 |
Q |
| |
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||||| |||||||||||||||||||| |
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| T |
28114176 |
tctggaagactagttttccccagaat |
28114201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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