View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_40 (Length: 266)
Name: NF17216_low_40
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 48219246 - 48219004
Alignment:
| Q |
1 |
tacaaaatattttctgttttattcagaaccgttctaactgatccgataacctgtgacccacacaaacccaacccgtaaaaaccgaatctagaaattgggc |
100 |
Q |
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| T |
48219246 |
tacaaaatattttcagttttcttcagaaccgttctaactgatctaataacccgtgatctgcacgaacccaacccgtaataactgaatctagaaattgggc |
48219147 |
T |
|
| Q |
101 |
agcagtgggtctcattccttcactgtgattccattctaactgatcataatatgaaaatactaggtgaggttcaagaatttctttgaaggaactacctcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48219146 |
agcagtgggtctcattccttcactgtgattccattctaactgatcataatatgaaaataccaggtgaggttcaagaatttctttgaaggaactacctcct |
48219047 |
T |
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| Q |
201 |
agatctgttaaaaatttcagatctatagaaatccttctgctgt |
243 |
Q |
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| T |
48219046 |
agatctgttaaaaatttcagatctatagaaatctttctgctgt |
48219004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 13925328 - 13925448
Alignment:
| Q |
3 |
caaaatattttctgttttattcagaaccgttctaactgatccgataacctgtgacccacacaaacccaacccgtaaaaaccgaatctagaaattgggcag |
102 |
Q |
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| T |
13925328 |
caaaatattttatgttgaattcaaaaccgagctaactgacccgctaaaccgtgacccgcacgaacccaacccttaaaaaccgaatctggaaattgggcag |
13925427 |
T |
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| Q |
103 |
cagtgggtctcattccttcac |
123 |
Q |
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| T |
13925428 |
caatgggtctcattccttcac |
13925448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 23401611 - 23401531
Alignment:
| Q |
152 |
tgaaaatactaggtgaggttcaagaatttctttgaaggaactacctcctagatctgttaaaaatttcagatctatagaaat |
232 |
Q |
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|||||||| ||||| |||||||||| ||||||||||||||| ||||||||||| || ||| ||||||||||||||||| |
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| T |
23401611 |
tgaaaatatcaggtgtggttcaagaacttctttgaaggaactgcctcctagatccattgaaatattcagatctatagaaat |
23401531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 5323208 - 5323150
Alignment:
| Q |
65 |
aacccaacccgtaaaaaccgaatctagaaattgggcagcagtgggtctcattccttcac |
123 |
Q |
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| T |
5323208 |
aacccaacccgtaaaaaccgaatctgaaaattgggcagaaaagggtcacatttcttcac |
5323150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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