View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_5 (Length: 609)
Name: NF17216_low_5
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 10 - 591
Target Start/End: Original strand, 43789674 - 43790254
Alignment:
| Q |
10 |
aagaaaataggagcagcttccataaaatgaactaaaagttaaagtaggatttcaaaattattacaaattttacacagctgataaaaatttgaggtagaaa |
109 |
Q |
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| T |
43789674 |
aagaaaataggaacagcttccataaaatgaactaaaagttaaagtaggatttcaaaattattacaaattttacacagctgataaaaatttgaggtagaaa |
43789773 |
T |
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| Q |
110 |
gatgtcacgctgtaggggaaacgtaccaacattgaataataaacttgtaatcaagtaattaaagtagtgaaacttttaacaatactttttataaatatca |
209 |
Q |
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| T |
43789774 |
gatgtcacgctgtaggggaaacgtaccaacattgaataataaacttgtaatcaagtaattaaagtagtgaaacttttaacaatactttttataaatatca |
43789873 |
T |
|
| Q |
210 |
tcagtattgaaaaacattgaatgtcaaatttggactaaattcacttcatagttcttactggattttcacggctgcgaaactcattatgatcatttccaag |
309 |
Q |
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| T |
43789874 |
tcagtattgaaaaacattgaatgtgaaatttggactaaattcacttcatagttcttactggattttcacggctgcgaaactcattatgatcatttccaag |
43789973 |
T |
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| Q |
310 |
aacaggtgcagtcaaatgatggacagcaagccttgcttgcacagcttctaagagctcatattcctctctacaaaagaaaaattagttctatcaaacatgt |
409 |
Q |
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| T |
43789974 |
aacaggtgcagtcaaatgatggacagcaagtcttgcttgcacagcttctaagagctcatattcctctctacaaaagaaaaattagttctatcaaccatgt |
43790073 |
T |
|
| Q |
410 |
caaaatgcaaaccctatccaaaaggactggggcattatcctaggactgaacacagtatatatgtcaagcgcacacgtctaaatattgaaacagaataatt |
509 |
Q |
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| T |
43790074 |
caaaatgcaaaccctatccaaaaggactggggcattatcctaggactgaacacaatatatatgtcaagcgcacacgtctaaatattgaaacagaataatt |
43790173 |
T |
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| Q |
510 |
tggttctgcggggnnnnnnnccgttgacatttaccttcctgaaacaaagcaatgcacaattcatgaaatggcacacactact |
591 |
Q |
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| T |
43790174 |
tggttctgcgggg-aaaaaaccgttgacatttaccttcctgaaacaaagcaatgcacaattcatgaaatggcacacactact |
43790254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 224 - 372
Target Start/End: Complemental strand, 10298240 - 10298099
Alignment:
| Q |
224 |
cattgaatgtcaaatttggactaaattcacttcatagttcttactggattttcacggctgcgaaactcattatgatcatttccaagaacaggtgcagtca |
323 |
Q |
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| T |
10298240 |
cattgaatgccaaatttagactaaattca-------gttcttactggattttcgcgactccgaaactcatcatgatcatttccaagaataggtgcagtca |
10298148 |
T |
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| Q |
324 |
aatgatggacagcaagccttgcttgcacagcttctaagagctcatattc |
372 |
Q |
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| T |
10298147 |
aattatggacaacaagttttgcttgcgcagcttctaagagcttatattc |
10298099 |
T |
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