View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17216_low_6 (Length: 578)
Name: NF17216_low_6
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 233 - 564
Target Start/End: Original strand, 48960713 - 48961044
Alignment:
| Q |
233 |
gccctactatgtctctacccacatttaggactgcttcagcacccccatcacctcataatcagactcaacctcaagaaaagaaaacagaacaaacattttc |
332 |
Q |
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| T |
48960713 |
gccctactatgtctctacccacatttaggactgcttcagcacccccatcacctcataatcaaactcaacctcaagaaaagaaaacagaacaaacactttc |
48960812 |
T |
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| Q |
333 |
atctccacctcataggggcttgtttcctaattcttcttcatcttcttcgatgccatcttctcctattcaaaagacaacacaatattcaagtagttcttcc |
432 |
Q |
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| T |
48960813 |
atctccacctcataggggcttgtttcccaattcttcttcatcttcttcgatgccatcttctcctattcaaaagacaacacaatattcaagtagttcttcc |
48960912 |
T |
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| Q |
433 |
ccagagaaaactacagccaacacttctcgtgttccaattcccactcaatctccaaaaactattaaacaaaacgttcgtagcccaatgcattcgccaaatg |
532 |
Q |
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| T |
48960913 |
ccagagaaaactacagccaacacttctcgtgttccaattcccactcaatctccaaaaactattaaacaaaacgttcgtagcccaatgcattcgccaaatg |
48961012 |
T |
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| Q |
533 |
ccagatccactaattcaccaccctctcctttg |
564 |
Q |
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| T |
48961013 |
ccagatccactaattcaccaccatctcctttg |
48961044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 48960469 - 48960633
Alignment:
| Q |
1 |
ataaaacacagcctcttccatatttttgtgtgctcattttttgtctcctccatttttcagtttacaacttctcttcacaaacttttaacatttccccaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48960469 |
ataaaacacagcctcttccatatttttgtgtgctcattttttgtctcctccatatttcagtttacaacttctcttcacaaacttttaacatttccccaac |
48960568 |
T |
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| Q |
101 |
aaagaaacaccatggctaacccacccccggttcgtccatggttccgcttaacctccattcgcccc |
165 |
Q |
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| T |
48960569 |
aaagaaacgccatggctaacccacccccggttcgtccatggttccgcttaacctccattcgcccc |
48960633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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