View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17216_low_9 (Length: 550)
Name: NF17216_low_9
Description: NF17216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17216_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 54928889 - 54929184
Alignment:
| Q |
11 |
cataggcgtttcagctgtaataacaggaatttctaattttgaattatgttaatgttaatacaattgtattctactttttatttaacatctaannnnnnnn |
110 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54928889 |
cataggtgtttcagctgtaatgactggaatttctaattttgaattatgttaatgttaatacaattgtattctactttttatttaacatctaattttttct |
54928988 |
T |
|
| Q |
111 |
nnnnn-actttgtacatttattcctttgtattacaatcaaatgtacgggttggcaaaataggtcgataagatttattggtctttattctatgatatacat |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| |||| |||||||| |||||||||||||||| |||||||||||||||||| || |
|
|
| T |
54928989 |
ttttttactttgtacatttatttgtttgtattacaatcaaacgtacgagttgacaaaatagatcgataagatttattgatctttattctatgatatatat |
54929088 |
T |
|
| Q |
210 |
ttttctaagacaatatttcatctgagatcaaaaattagttattggtctttattaccgtccataggaccggtgcagcgcacgggtcggcaatctagt |
305 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| | |||||||| ||| |||||| | |||| |||||||||||||||||||||| |
|
|
| T |
54929089 |
ttttctaagataatatttcatctgagatcaaaaattatttattgatttttattacagtcgataggatccgtgcggcgcacgggtcggcaatctagt |
54929184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 126 - 282
Target Start/End: Original strand, 50466364 - 50466520
Alignment:
| Q |
126 |
tttattcctttgtattacaatcaaatgtacgggttggcaaaataggtcgataagatttattggtctttattctatgatatacatttttctaagacaatat |
225 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
50466364 |
tttattcctttatattacaatcaaacatatgggttggaaaaataggttgataagacctattggtctatattctatgatatacatttttctacgataatat |
50466463 |
T |
|
| Q |
226 |
ttcatctgagatcaaaaattagttattggtctttattaccgtccataggaccggtgc |
282 |
Q |
| |
|
||||| |||||| ||| |||| |||||||||||||||| ||| |||||||| |||| |
|
|
| T |
50466464 |
ttcatttgagattaaagattacttattggtctttattatagtcgataggacccgtgc |
50466520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 50466289 - 50466336
Alignment:
| Q |
55 |
tatgttaatgttaatacaattgtattctactttttatttaacatctaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50466289 |
tatgttaatgttaatacaattgtattctactatttatttaacatctaa |
50466336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 394 - 535
Target Start/End: Complemental strand, 2625254 - 2625112
Alignment:
| Q |
394 |
tatgcttcttgtgatcttggtgaaacgtaaatgcatacattcttt-gttagctcaaaggctactaatttatggaagttagttggcatttatgacaccttt |
492 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2625254 |
tatgtttcttgtgatcttggtgaaacgtaaatgcatacatttttttgtttgctcaaaggctactaatttatggaagttaattggcatttatgacaccttt |
2625155 |
T |
|
| Q |
493 |
caaatgctcctccctaatgctaacaatttcatgacaacactct |
535 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
2625154 |
caaatgttcctccctaatgttaacaatttgatgacaacactct |
2625112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 13061896 - 13061716
Alignment:
| Q |
126 |
tttattcctttgtattacaatcaaatgtacgggttggcaaaataggtcgataagatttattggtctttattctatgatatacatttttctaagacaatat |
225 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| || |||| |
|
|
| T |
13061896 |
tttattcctttatattacaatcaatcacatgggttggcaaaataggtcggtaagacttattgatctttattctatgatatacatttttctacgattatat |
13061797 |
T |
|
| Q |
226 |
ttcatctgagatcaaaaattagttattggtctttattaccgtccataggaccggtgcagcgcacgggtcggcaatctagtt |
306 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||| ||| |||||||| |||| ||||||| ||| || |||||||| |
|
|
| T |
13061796 |
tttatctgagatcaaaaattacttattggtctttattacagtcgataggacccgtgcggcgcacgagtcagcgatctagtt |
13061716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 13061968 - 13061921
Alignment:
| Q |
55 |
tatgttaatgttaatacaattgtattctactttttatttaacatctaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13061968 |
tatgttaatgttaatacaattgtattccactttttatttaacatctaa |
13061921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 33708042 - 33708082
Alignment:
| Q |
414 |
tgaaacgtaaatgcatacattctttgttagctcaaaggcta |
454 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| ||||||| |
|
|
| T |
33708042 |
tgaaacgcaaatgcatacattctttgtttgctcgaaggcta |
33708082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 24532229 - 24532193
Alignment:
| Q |
269 |
cataggaccggtgcagcgcacgggtcggcaatctagt |
305 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
24532229 |
cataggacccgtgcggcgcacgggtcggcaatctagt |
24532193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University