View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_high_10 (Length: 349)
Name: NF17217_high_10
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 19796197 - 19795868
Alignment:
| Q |
1 |
ggtactgagaaagactccatcgtggctgaagaggtggcagcgagagctaaggctgagaaagaaggtgctcacgttttgaaggaagagaagaggattgcat |
100 |
Q |
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| T |
19796197 |
ggtactgagaaagactccatcgtgactgaagaggtggcagcgagagctaaggttgagaaagaaggtgctcacgttttgaaggaagagaagaggattgcat |
19796098 |
T |
|
| Q |
101 |
tagctaagaagcttgttgatcgttatactaccgatcccaattttaagtttcttcatgattgtatctctgatcattttgctgattgtttgaagaaggatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19796097 |
tagctaagaagcttgttgatcgttatactaccgatcccaattttaagtttcttcacgattgtatctctgatcatttcgctgattgtttgaagaaggatct |
19795998 |
T |
|
| Q |
201 |
tcagtttttgaaatctgggttgcccacaaaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttgatcgatccactcttctgtgtgag |
300 |
Q |
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||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
19795997 |
cgagtttttgaaatccgggtcgcccaataaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttgatcggtcaactcttctgtgtgag |
19795898 |
T |
|
| Q |
301 |
agtattgcaaagaggatcttccctcgggag |
330 |
Q |
| |
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| ||||| |||| |||||||||| ||||| |
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| T |
19795897 |
accattgccaagaagatcttccctagggag |
19795868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 26 - 330
Target Start/End: Original strand, 19785415 - 19785719
Alignment:
| Q |
26 |
ctgaagaggtggcagcgagagctaaggctgagaaagaaggtgctcacgttttgaaggaagagaagaggattgcattagctaagaagcttgttgatcgtta |
125 |
Q |
| |
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||||||||||||| ||||| ||||||||| ||||| || ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
19785415 |
ctgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgtta |
19785514 |
T |
|
| Q |
126 |
tactaccgatcccaattttaagtttcttcatgattgtatctctgatcattttgctgattgtttgaagaaggatcttcagtttttgaaatctgggttgccc |
225 |
Q |
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|||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785515 |
cactaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgattgtttgaagaaggatcttcagtttttgaaatctgggttgccc |
19785614 |
T |
|
| Q |
226 |
acaaaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttgatcgatccactcttctgtgtgagagtattgcaaagaggatcttccctc |
325 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19785615 |
aataaaatcagccttgctgctaaatggtgcccttctgttgactcttcctttgatcgatcgactcttctgtgtgagagtattgcaaagaggatcttccctc |
19785714 |
T |
|
| Q |
326 |
gggag |
330 |
Q |
| |
|
||||| |
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|
| T |
19785715 |
gggag |
19785719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 27 - 330
Target Start/End: Complemental strand, 15835478 - 15835175
Alignment:
| Q |
27 |
tgaagaggtggcagcgagagctaaggctgagaaagaaggtgctcacgttttgaaggaagagaagaggattgcattagctaagaagcttgttgatcgttat |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||||| || |
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| T |
15835478 |
tgaagaggtggctgcgagagctaaggctcagaaagaaactgctcacgctttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgatac |
15835379 |
T |
|
| Q |
127 |
actaccgatcccaattttaagtttcttcatgattgtatctctgatcattttgctgattgtttgaagaaggatcttcagtttttgaaatctgggttgccca |
226 |
Q |
| |
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| | || || |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
15835378 |
aatcgtgaccctgattttaagttccttcataattgtatctctcatcattttgctgattgtttgaagaaggatcttgagtttttgaaatctgggtcaccca |
15835279 |
T |
|
| Q |
227 |
caaaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttgatcgatccactcttctgtgtgagagtattgcaaagaggatcttccctcg |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || |||||||||||||||| || |||||||||||||||| ||||| |||||||| |||||||| |
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| T |
15835278 |
gaaaaatcagtcttgctgctaaatggtgcccctctctttactcttcctttgatcggtcaactcttctgtgtgagaccattgccaagaggatattccctcg |
15835179 |
T |
|
| Q |
327 |
ggag |
330 |
Q |
| |
|
|||| |
|
|
| T |
15835178 |
ggag |
15835175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 78 - 279
Target Start/End: Complemental strand, 47713019 - 47712818
Alignment:
| Q |
78 |
gaaggaagagaagaggattgcattagctaagaagcttgttgatcgttatactaccgatcccaattttaagtttcttcatgattgtatctctgatcatttt |
177 |
Q |
| |
|
|||| ||||||||| ||||| ||| ||||||||||||||||| || |||| | || || ||||||||||||||||||||||||| |||||||||||| |
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| T |
47713019 |
gaagaaagagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttt |
47712920 |
T |
|
| Q |
178 |
gctgattgtttgaagaaggatcttcagtttttgaaatctgggttgcccacaaaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttg |
277 |
Q |
| |
|
||||||||||| ||||| ||| || |||||||||||| ||||| | ||||||| || ||||||||||| |||||||| ||||| ||||||||||| |||| |
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| T |
47712919 |
gctgattgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttg |
47712820 |
T |
|
| Q |
278 |
at |
279 |
Q |
| |
|
|| |
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|
| T |
47712819 |
at |
47712818 |
T |
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