View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_high_11 (Length: 333)
Name: NF17217_high_11
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_high_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 167 - 333
Target Start/End: Complemental strand, 6920558 - 6920392
Alignment:
| Q |
167 |
tttggaccaagctagtttggaatattagcatgaacattccttttaggaaagagttatccttcgtttgaagttatgagtatttgttcgcctttttccccgg |
266 |
Q |
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| T |
6920558 |
tttgggccaagctagtttggaatattagcatgaacattccttttaggaaagagttatccttcgtttgaagttatgagtatttgttcgcctttttccccgg |
6920459 |
T |
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| Q |
267 |
atgcatgcaatacactttactttgaatggcacatagttcaccttctttccctaaaacaaatacaagc |
333 |
Q |
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| T |
6920458 |
atgcatgcaatgcactttactttgaatggcacatggttcaccttctttccctaaaacaaatacaagc |
6920392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 6920745 - 6920589
Alignment:
| Q |
4 |
ctcgtgctatacctatacaggataagcttgttgcagcaagcttatccttctcttttgaatattgttgaatacaatatcattccattggagcaaaggagtg |
103 |
Q |
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| T |
6920745 |
ctcgtgctatacctatacaggataagcttgttgcagcaagcttatccttctcttttgaatattgttgaaaacactatcattccattggagcaaaggagtg |
6920646 |
T |
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| Q |
104 |
atgaattactttggtctcaagctgattatgaacagctttctctaaaatcagcctatg |
160 |
Q |
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| T |
6920645 |
atgaattactttggtctcaagctgattatgaacagctttctctaaaatcagcctatg |
6920589 |
T |
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