View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17217_high_23 (Length: 212)
Name: NF17217_high_23
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 11571450 - 11571592
Alignment:
| Q |
8 |
ccctttacttcttgtttctcttaacttctaatattttgtgcttatgcttcttaactgttatgtctctgatataatgttttcattaatttctgatgcttta |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11571450 |
ccctttacttcttgtttatcttaacttctaatattttgtgcttatgcttcttaactgttatgtctctgatataatgttttctttaatttctgatgcttta |
11571549 |
T |
|
| Q |
108 |
attttgtatattttattgcatctggtacatagaattattcatg |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11571550 |
attttgtatattttattgcatctggtacatagaattattcatg |
11571592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University