View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17217_high_8 (Length: 412)

Name: NF17217_high_8
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17217_high_8
NF17217_high_8
[»] chr2 (18 HSPs)
chr2 (17-401)||(9604917-9605300)
chr2 (230-282)||(32827449-32827501)
chr2 (342-398)||(16518833-16518889)
chr2 (348-386)||(38074470-38074508)
chr2 (345-395)||(44439312-44439362)
chr2 (345-390)||(1976846-1976891)
chr2 (347-395)||(15220838-15220886)
chr2 (346-390)||(29229759-29229802)
chr2 (346-390)||(29343059-29343102)
chr2 (345-395)||(4894134-4894184)
chr2 (345-395)||(11511011-11511061)
chr2 (346-387)||(10644662-10644703)
chr2 (349-390)||(40401625-40401666)
chr2 (347-400)||(42973219-42973272)
chr2 (345-377)||(7151217-7151249)
chr2 (345-381)||(7297069-7297105)
chr2 (346-390)||(9943465-9943509)
chr2 (346-390)||(32837933-32837977)
[»] chr1 (11 HSPs)
chr1 (348-398)||(48548988-48549038)
chr1 (345-390)||(1233363-1233408)
chr1 (343-388)||(1514399-1514444)
chr1 (343-388)||(7524169-7524214)
chr1 (349-390)||(42765328-42765369)
chr1 (354-396)||(24697574-24697616)
chr1 (302-388)||(30557517-30557603)
chr1 (343-380)||(28464987-28465024)
chr1 (345-390)||(52263629-52263674)
chr1 (346-390)||(3016221-3016265)
chr1 (343-375)||(39673963-39673995)
[»] chr6 (11 HSPs)
chr6 (346-403)||(32888926-32888983)
chr6 (346-395)||(34620945-34620994)
chr6 (346-395)||(34748382-34748431)
chr6 (344-395)||(4910965-4911016)
chr6 (345-387)||(1485131-1485173)
chr6 (345-398)||(882744-882797)
chr6 (345-395)||(2493988-2494038)
chr6 (346-388)||(8860563-8860605)
chr6 (343-388)||(25195350-25195395)
chr6 (345-390)||(31305829-31305874)
chr6 (346-390)||(12766641-12766685)
[»] chr4 (11 HSPs)
chr4 (346-390)||(25319107-25319151)
chr4 (345-395)||(55927747-55927797)
chr4 (346-390)||(22683923-22683967)
chr4 (302-380)||(11271530-11271609)
chr4 (343-382)||(16552011-16552050)
chr4 (345-395)||(27096575-27096625)
chr4 (345-375)||(32100350-32100380)
chr4 (345-382)||(10185252-10185289)
chr4 (343-388)||(32818354-32818399)
chr4 (346-395)||(41058980-41059029)
chr4 (347-395)||(33843771-33843819)
[»] chr8 (13 HSPs)
chr8 (347-389)||(14382456-14382498)
chr8 (344-382)||(32101130-32101168)
chr8 (343-388)||(26100130-26100175)
chr8 (343-388)||(32927948-32927993)
chr8 (345-398)||(36447722-36447775)
chr8 (353-389)||(10553155-10553191)
chr8 (343-398)||(16972038-16972093)
chr8 (341-388)||(37684459-37684506)
chr8 (345-390)||(2924835-2924880)
chr8 (345-390)||(13929679-13929724)
chr8 (343-388)||(38257628-38257673)
chr8 (346-390)||(27218827-27218871)
chr8 (346-395)||(32767446-32767497)
[»] chr7 (5 HSPs)
chr7 (345-395)||(40561735-40561785)
chr7 (345-389)||(45005078-45005122)
chr7 (343-381)||(32295240-32295278)
chr7 (328-381)||(5869107-5869160)
chr7 (349-398)||(27571924-27571973)
[»] chr5 (8 HSPs)
chr5 (345-398)||(35138997-35139050)
chr5 (346-390)||(37886020-37886064)
chr5 (343-373)||(10898777-10898807)
chr5 (215-281)||(11599554-11599620)
chr5 (345-398)||(117470-117523)
chr5 (346-403)||(9184984-9185041)
chr5 (345-390)||(12208815-12208860)
chr5 (346-398)||(4306571-4306623)
[»] chr3 (11 HSPs)
chr3 (345-382)||(46853524-46853561)
chr3 (345-395)||(27266771-27266821)
chr3 (345-398)||(29475359-29475412)
chr3 (343-388)||(31708223-31708268)
chr3 (325-382)||(190862-190921)
chr3 (343-379)||(4526188-4526224)
chr3 (346-390)||(7262873-7262917)
chr3 (345-377)||(30300993-30301025)
chr3 (346-378)||(36302242-36302274)
chr3 (345-377)||(37703157-37703189)
chr3 (346-390)||(43661898-43661942)
[»] scaffold0361 (1 HSPs)
scaffold0361 (345-395)||(14091-14141)
[»] scaffold0036 (1 HSPs)
scaffold0036 (347-395)||(927-975)


Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 9604917 - 9605300
Alignment:
Q  17 acttattgtatgagttaaattagcttctgcatctcaaattgttcaaatctaaacttgtatcaatatatgcttataacaatttcttcaaaataaaaacaac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9604917 acttattgtatgagttaaattagcttctgcatctcaaattgttcaaatctaaacttgtatcaatatatgcttataacaatttcttcaaaataaaaacaac 9605016  T
Q  117 gtacttttccaaattttgaaattagctccagtatctcaatttttaacttctccatggatacttagaatgtgattgattggtttcatggtagcaagtgata 216  Q
    | |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9605017 gaactttttcaaattt-gaaattagctccagtatctcaatttttaacttctcaatggatacttagaatgtgattgattggtttcatggtagcaagtgata 9605115  T
Q  217 gaagtgattcaacacacataaaattaactttgacatgtttggatgatgtcaattgaaattgattttcacaagtaggagttcaaacaagctaggacatgta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  9605116 gaagtgattcaacacacataaaattaactttgacatgtttggatgatgtcaattgaaattgattttcacaagtgggagttctaacaagctaggacatgta 9605215  T
Q  317 gttttttactccaaacttgacttttgcacaaatttattgttcaactcacttttacataaatgtatctaaacatacatcatttcat 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9605216 gttttttactccaaacttgacttttgcacaaatttattgttcaactcacttttacataaatgtatctatacatacatcatttcat 9605300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 32827449 - 32827501
Alignment:
Q  230 acacataaaattaactttgacatgtttggatgatgtcaattgaaattgatttt 282  Q
    ||||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  32827449 acacatataattgattttgacatgtttggatgatgtcaattgaaattgatttt 32827501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 16518833 - 16518889
Alignment:
Q  342 gcacaaatttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||||| | |||||||    
T  16518833 gcacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcattt 16518889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 38074470 - 38074508
Alignment:
Q  348 atttattgttcaactcacttttacataaatgtatctaaa 386  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  38074470 atttattgttcaactcacttttacataaatgtatttaaa 38074508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 44439312 - 44439362
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||| ||||    
T  44439312 caaatttattgttcaactcacttttacataaacatatccaaacataaatca 44439362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 1976891 - 1976846
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||    
T  1976891 caaatttattgttgaactcacttttacatgaatgtatccaaacata 1976846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 15220886 - 15220838
Alignment:
Q  347 aatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    |||||||||||||||||||||| |||| |||||||| ||||||| ||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaatca 15220838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 29229802 - 29229759
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||    
T  29229802 aaatttattgttcaa-tcacttttacataaatatatctaaacata 29229759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 29343102 - 29343059
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||    
T  29343102 aaatttattgttcaa-tcacttttacataaatatatctaaacata 29343059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 4894184 - 4894134
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    |||||||||| ||||| ||||||||| || |||||||||||||||| ||||    
T  4894184 caaatttattattcaagtcacttttaaatgaatgtatctaaacataaatca 4894134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 11511011 - 11511061
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    ||||||||||||||||| |||||||| || |||||| ||||||||| ||||    
T  11511011 caaatttattgttcaacccacttttatatgaatgtagctaaacataaatca 11511061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 10644662 - 10644703
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaac 387  Q
    |||||||| |||||||||||||||| ||||||||||| ||||    
T  10644662 aaatttatagttcaactcacttttatataaatgtatccaaac 10644703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 40401666 - 40401625
Alignment:
Q  349 tttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||||||||||||| |||||||||| |||||||| |||||||    
T  40401666 tttattgttcaactgacttttacatgaatgtatccaaacata 40401625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 42973219 - 42973272
Alignment:
Q  347 aatttattgttcaactcacttttacataaatgtatctaaacatacatcatttca 400  Q
    |||||||| ||||||||| |||||||||||||||| | |||||| | |||||||    
T  42973219 aatttattattcaactcatttttacataaatgtatattaacataaaccatttca 42973272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 7151249 - 7151217
Alignment:
Q  345 caaatttattgttcaactcacttttacataaat 377  Q
    |||||||||| ||||||||||||||||||||||    
T  7151249 caaatttattcttcaactcacttttacataaat 7151217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 7297069 - 7297105
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtat 381  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  7297069 caaatttattgttcaacttacttttacatatatgtat 7297105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 9943465 - 9943509
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||||||||||| |||||||| ||||||||  ||||||||    
T  9943465 aaatttattgttcaacttacttttacctaaatgtaattaaacata 9943509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 32837977 - 32837933
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||| |||||||||||||| | |||||||||| |||||||    
T  32837977 aaatttatttttcaactcacttttccgtaaatgtatccaaacata 32837933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 48549038 - 48548988
Alignment:
Q  348 atttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  48549038 atttattgttcaactcacttttacataaatgtatcaaaacataaatcattt 48548988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 1233363 - 1233408
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||    
T  1233363 caaatttattgttgaactcactttcacatgaatgtatctaaacata 1233408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 1514399 - 1514444
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||    
T  1514399 cacaaatttattgttcaactcatttttacatgaatgtatccaaaca 1514444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 7524169 - 7524214
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    ||||||||||| ||||||||||||||||||||||||| || |||||    
T  7524169 cacaaatttatagttcaactcacttttacataaatgtgtccaaaca 7524214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 42765328 - 42765369
Alignment:
Q  349 tttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  42765328 tttattgttcaactcacttttacatccatgtatctaaacata 42765369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 24697616 - 24697574
Alignment:
Q  354 tgttcaactcacttttacataaatgtatctaaacatacatcat 396  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||    
T  24697616 tgttcaactcacttttacataaacgtatccaaacataaatcat 24697574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 388
Target Start/End: Original strand, 30557517 - 30557603
Alignment:
Q  302 aagctaggacatgtagttttttactccaaacttgacttttgcacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    |||||||||  |||||||||| | || | | |||| |||  ||||||||||| |||||||||||||||| || |||||||| |||||    
T  30557517 aagctaggatttgtagtttttgattctagaattgattttcacacaaatttatagttcaactcacttttatatgaatgtatccaaaca 30557603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 28465024 - 28464987
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgta 380  Q
    ||||||||||||||||||| || |||||||||||||||    
T  28465024 cacaaatttattgttcaacccatttttacataaatgta 28464987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 52263674 - 52263629
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||||||| |||||| |||||||| |||||||| |||||||    
T  52263674 caaatttattgtttaactcagttttacattaatgtatccaaacata 52263629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 3016221 - 3016265
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||||||  ||||||||||||||||||| |||||||| |||||||    
T  3016221 aaatttacggttcaactcacttttacatgaatgtatccaaacata 3016265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 39673963 - 39673995
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataa 375  Q
    |||| ||||||||||||||||||||||||||||    
T  39673963 cacatatttattgttcaactcacttttacataa 39673995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 32888983 - 32888926
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacatacatcatttcatct 403  Q
    |||||||||||||||||||||||||||||||| |||  ||||||| ||||||| ||||    
T  32888983 aaatttattgttcaactcacttttacataaatatattcaaacataaatcattttatct 32888926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 34620945 - 34620994
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  34620945 aaatttatttttcaactcacttttacataaatgtatccaaacataaatca 34620994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 34748382 - 34748431
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  34748382 aaatttatttttcaactcacttttacataaatgtatccaaacataaatca 34748431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 395
Target Start/End: Original strand, 4910965 - 4911016
Alignment:
Q  344 acaaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||| ||||    
T  4910965 acaaatttatagttcgactcacttttacataaatgtatccaaacataaatca 4911016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 1485173 - 1485131
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaac 387  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  1485173 caaatttattgttcaactcacttttacataagtgtatccaaac 1485131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 882744 - 882797
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    ||||||||||||| ||||||||||| ||| |||||||| ||||||| |||||||    
T  882744 caaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattt 882797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 2494038 - 2493988
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||||| ||||    
T  2494038 caaatttattgttcaacacacttttacataaatatattcaaacataaatca 2493988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 8860563 - 8860605
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||    
T  8860563 aaatttatggttcaactcacttttgcatgaatgtatctaaaca 8860605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 25195395 - 25195350
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||    
T  25195395 cacaaatttacaattcaactcacttttacataaatgtatccaaaca 25195350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 31305874 - 31305829
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||||| ||||||||||||||||| ||| |||| |||||||    
T  31305874 caaatttattgatcaactcacttttacattaatatatccaaacata 31305829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 12766685 - 12766641
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||||||||||| ||||||||||| ||| |||||||| |||||||    
T  12766685 aaatttattgtttaactcacttttgcatgaatgtatcaaaacata 12766641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 25319107 - 25319151
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  25319107 aaatttattgttcaactcacttttacgtaaatgtatcgaaacata 25319151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 55927797 - 55927747
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||| ||||    
T  55927797 caaatttattgttcaagtcacttttacatgaatgtatccaaacataaatca 55927747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 22683923 - 22683967
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||||||||||||||||| ||||||||||||||| || |||||||    
T  22683923 aaatttattgttcaactcgcttttacataaatgtgtccaaacata 22683967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 11271609 - 11271530
Alignment:
Q  302 aagctaggacatgtagttttttactccaaacttgacttttgcacaaa-tttattgttcaactcacttttacataaatgta 380  Q
    |||||||||  ||||| |||| | || |||| |||||||||||| || ||||||||||||||||||||||  ||||||||    
T  11271609 aagctaggatttgtagcttttgagtctaaacatgacttttgcactaagtttattgttcaactcacttttatgtaaatgta 11271530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 16552011 - 16552050
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatc 382  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  16552011 cacaaatttatagttcaactcacttttacatgaatgtatc 16552050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 27096625 - 27096575
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||||| ||||    
T  27096625 caaatttattgttcaacacacttttacataaatatattcaaacataaatca 27096575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 375
Target Start/End: Original strand, 32100350 - 32100380
Alignment:
Q  345 caaatttattgttcaactcacttttacataa 375  Q
    |||||||||||||||||||||||||||||||    
T  32100350 caaatttattgttcaactcacttttacataa 32100380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 10185252 - 10185289
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatc 382  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  10185252 caaatttattgtttaactcacttttacattaatgtatc 10185289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 32818399 - 32818354
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    ||||||||||| |||||||| |||||||||| |||||||| |||||    
T  32818399 cacaaatttatagttcaactaacttttacatgaatgtatccaaaca 32818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 41058980 - 41059029
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    ||||| |||||||||| |||||||| |||||||||||| |||||| ||||    
T  41058980 aaattgattgttcaacccacttttatataaatgtatctgaacataaatca 41059029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 33843771 - 33843819
Alignment:
Q  347 aatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    |||||||||||||||||||| |||||| ||| |||| ||||||| ||||    
T  33843771 aatttattgttcaactcactattacatgaatatatccaaacataaatca 33843819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 389
Target Start/End: Original strand, 14382456 - 14382498
Alignment:
Q  347 aatttattgttcaactcacttttacataaatgtatctaaacat 389  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  14382456 aatttattgttcaactcacttttacataaaagtatcgaaacat 14382498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 32101130 - 32101168
Alignment:
Q  344 acaaatttattgttcaactcacttttacataaatgtatc 382  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  32101130 acaaatttatagttcaactcacttttacataaatgtatc 32101168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 26100175 - 26100130
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||    
T  26100175 cacaaatttatggttcaactcacttttacataaatgcatccaaaca 26100130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 32927948 - 32927993
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||||    
T  32927948 cacaaatttatagttcaactcacttttacatgaatgtatccaaaca 32927993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 36447775 - 36447722
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    |||||||||| ||||||||| || |||||||||||||||||||| | |||||||    
T  36447775 caaatttattattcaactcagttatacataaatgtatctaaacacaaatcattt 36447722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 10553191 - 10553155
Alignment:
Q  353 ttgttcaactcacttttacataaatgtatctaaacat 389  Q
    ||||||||||||||||||||||||||||| |||||||    
T  10553191 ttgttcaactcacttttacataaatgtatttaaacat 10553155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 16972093 - 16972038
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    |||||||||||||||||| |||||||||||| |||||||  ||||| | |||||||    
T  16972093 cacaaatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattt 16972038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 37684459 - 37684506
Alignment:
Q  341 tgcacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    |||| ||||||||  ||||||||||||||||||||||||||| |||||    
T  37684459 tgcaaaaatttataattcaactcacttttacataaatgtatccaaaca 37684506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 2924835 - 2924880
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||| ||||| |||||||||||||||||| ||||||| |||||||    
T  2924835 caaatatattgatcaactcacttttacatatatgtatccaaacata 2924880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 13929724 - 13929679
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||||||||| |||||| ||||||||||| |||||||| |||||||    
T  13929724 caaatttatttttcaacccacttttacatgaatgtatcaaaacata 13929679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 38257628 - 38257673
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    |||||||||||  ||||||||| ||||||||||||| |||||||||    
T  38257628 cacaaatttataattcaactcatttttacataaatgcatctaaaca 38257673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 27218871 - 27218827
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||  ||||||||| |||||||||||| ||||||||||||    
T  27218871 aaatttataattcaactcatttttacataaatttatctaaacata 27218827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 32767446 - 32767497
Alignment:
Q  346 aaatttattgttcaactcactttt--acataaatgtatctaaacatacatca 395  Q
    ||||||||||||||||||||||||  |||| |||||||| ||||||| ||||    
T  32767446 aaatttattgttcaactcacttttacacatgaatgtatccaaacataaatca 32767497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 40561785 - 40561735
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||| ||||    
T  40561785 caaatatattgttcaactcacttttacatgaatgtatccaaacataaatca 40561735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 45005078 - 45005122
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacat 389  Q
    |||||||||| |||||||||||||||||||||| |||| ||||||    
T  45005078 caaatttattattcaactcacttttacataaatatatcaaaacat 45005122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 32295240 - 32295278
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtat 381  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  32295240 cacaaatttataattcaactcacttttacataaatgtat 32295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 5869107 - 5869160
Alignment:
Q  328 caaacttgacttttgcacaaatttattgttcaactcacttttacataaatgtat 381  Q
    ||||| ||| |||| |||||||||| ||||||| ||||||||||||||| ||||    
T  5869107 caaacatgaattttacacaaatttactgttcaaatcacttttacataaacgtat 5869160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 27571924 - 27571973
Alignment:
Q  349 tttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    |||||| |||||||||| |||||||||||||||| || |||| |||||||    
T  27571924 tttattattcaactcacatttacataaatgtatccaaccataaatcattt 27571973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 35139050 - 35138997
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    |||||||||||||||||||||||| | || ||||||||| |||||| |||||||    
T  35139050 caaatttattgttcaactcactttcatatgaatgtatctgaacataaatcattt 35138997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 37886064 - 37886020
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||    
T  37886064 aaatttattgttcaactcacttttacacaaatgtattcaaacata 37886020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 373
Target Start/End: Original strand, 10898777 - 10898807
Alignment:
Q  343 cacaaatttattgttcaactcacttttacat 373  Q
    |||||||||||||||||||||||||||||||    
T  10898777 cacaaatttattgttcaactcacttttacat 10898807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 11599554 - 11599620
Alignment:
Q  215 tagaagtgattcaacacacataaaattaactttgacatgtttggatgatgtcaattgaaattgattt 281  Q
    |||||||||||||  |||||||||||| | |||||||||||| || ||| ||| ||| |||||||||    
T  11599554 tagaagtgattcaggacacataaaattgattttgacatgttttgacgatttcagttggaattgattt 11599620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 117523 - 117470
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    ||||| ||||||| |||||||||||||||| ||||||| ||||||  |||||||    
T  117523 caaatgtattgtttaactcacttttacatagatgtatccaaacatgaatcattt 117470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 9185041 - 9184984
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacatacatcatttcatct 403  Q
    |||||||| ||||||||||||| ||||||| |||||  ||||||| ||||||| ||||    
T  9185041 aaatttatcgttcaactcacttctacataagtgtattcaaacataaatcattttatct 9184984  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 12208860 - 12208815
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||||||||| |||||| ||||||||||| |||||||| |||||||    
T  12208860 caaatttatttttcaacccacttttacatgaatgtatcaaaacata 12208815  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 4306571 - 4306623
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    ||||||||||||||| ||  |||||||| |||||||| ||||||| |||||||    
T  4306571 aaatttattgttcaattcttttttacatgaatgtatccaaacataaatcattt 4306623  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 382
Target Start/End: Complemental strand, 46853561 - 46853524
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatc 382  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  46853561 caaatttattgttcaactcacttttacataaatatatc 46853524  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 27266821 - 27266771
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    |||||||||||||||||| |||||||||| ||  |||||||||||| ||||    
T  27266821 caaatttattgttcaactaacttttacatgaaaatatctaaacataaatca 27266771  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 29475412 - 29475359
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatcattt 398  Q
    ||||||| |||||||||||| ||| ||||||| ||||| ||||||| |||||||    
T  29475412 caaattttttgttcaactcagtttgacataaacgtatcaaaacataaatcattt 29475359  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 31708268 - 31708223
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgtatctaaaca 388  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||    
T  31708268 cacaaatttataattcaactcacttttacatgaatgtatccaaaca 31708223  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 190862 - 190921
Alignment:
Q  325 ctccaaacttgacttttgcac--aaatttattgttcaactcacttttacataaatgtatc 382  Q
    |||||||| ||| ||||||||  ||||||||||||||||||||||| || | ||||||||    
T  190862 ctccaaacatgatttttgcactcaaatttattgttcaactcactttcacgtgaatgtatc 190921  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 4526188 - 4526224
Alignment:
Q  343 cacaaatttattgttcaactcacttttacataaatgt 379  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  4526188 cacaaatttatagttcaacacacttttacataaatgt 4526224  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 7262873 - 7262917
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||||||| || |||||||||||||||| |||||||| |||||||    
T  7262873 aaatttatcgtccaactcacttttacatgaatgtatcaaaacata 7262917  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 30301025 - 30300993
Alignment:
Q  345 caaatttattgttcaactcacttttacataaat 377  Q
    ||||||||||||||||| |||||||||||||||    
T  30301025 caaatttattgttcaacccacttttacataaat 30300993  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 36302242 - 36302274
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatg 378  Q
    |||||||||||||||||||||||||||| ||||    
T  36302242 aaatttattgttcaactcacttttacatgaatg 36302274  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 37703157 - 37703189
Alignment:
Q  345 caaatttattgttcaactcacttttacataaat 377  Q
    |||||||||||||||| ||||||||||||||||    
T  37703157 caaatttattgttcaattcacttttacataaat 37703189  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 43661898 - 43661942
Alignment:
Q  346 aaatttattgttcaactcacttttacataaatgtatctaaacata 390  Q
    |||| ||||||||||||||||||||||| |||||||  |||||||    
T  43661898 aaatgtattgttcaactcacttttacatgaatgtataaaaacata 43661942  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 14141 - 14091
Alignment:
Q  345 caaatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    |||||||||| ||||||||||||| |||| |||||||| ||||||| ||||    
T  14141 caaatttatttttcaactcactttcacatgaatgtatccaaacataaatca 14091  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 975 - 927
Alignment:
Q  347 aatttattgttcaactcacttttacataaatgtatctaaacatacatca 395  Q
    |||||||||||||||| |||||||||| ||||| |||| ||||| ||||    
T  975 aatttattgttcaacttacttttacatgaatgtttctacacataaatca 927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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