View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17217_low_1 (Length: 769)
Name: NF17217_low_1
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17217_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 33305862 - 33306243
Alignment:
| Q |
17 |
cttttactcattcaactcctttaatttttagtaagttgcaggcctcatgaatactttcttgcatgtcatccgattgtacatgttttacaggcacaaattt |
116 |
Q |
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| T |
33305862 |
cttttactcattcaactcctttaacttttagtaagttgcaggcctcatgaatactttcttgcatgtcatccgattgtacatgttttacaggcacaaattt |
33305961 |
T |
|
| Q |
117 |
aacacttcattggtttctctttataattaacactactcattatgnnnnnnnaacactactaaaaagaacataagtttattgtcataccatcatgaggnnn |
216 |
Q |
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| T |
33305962 |
aacacttcattggtttctctttataattaacactactcattatgtttttttaacactactaaaaagaacataagtttattgtcataccatcatgaggaaa |
33306061 |
T |
|
| Q |
217 |
nnnntacttgatatctcaaaatttaagcttttaacttcactctcaattctctacctaatagaattctccaaagaaacaagaaatatgtacaagtcagttt |
316 |
Q |
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| T |
33306062 |
aaaatacttgatatctcaaaatttaagcttttaacttcactctcaattctctaccatatagaattcttcaaagaaacaagaaatatgtacaagtcagttt |
33306161 |
T |
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| Q |
317 |
atcagcattagtcatgttatgtaccaatccacacaacagtacgtctagccacaaaatcatcacatacatgttctaacgacaa |
398 |
Q |
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| T |
33306162 |
atcagcactagtcctgttatgtaccaatccacacaacagtacgtctagccacaaaatcatcacatacatgttccaacgacaa |
33306243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 429 - 741
Target Start/End: Original strand, 33306243 - 33306555
Alignment:
| Q |
429 |
atgtaatattgtgatcaaatgtcattggtggaggaaacaacgcctgctcctgttgatccataacaccagcaaaaaactgcgtagatgcaatagaaacagt |
528 |
Q |
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| T |
33306243 |
atgtaatattgtgatcaaatgtcattggtggaggaa-caacgcctgctcctgttgatccataccaccagcaaaaaactgcgcagatgcaatagaaacagt |
33306341 |
T |
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| Q |
529 |
gtgnnnnnnnn-ccacaaaccatcactttcagcctctttttgaaatatcaaaatggatgtcttagcagcagaattcaaatcagtcaaagtatcaccaaga |
627 |
Q |
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| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33306342 |
gcgtttttttttccacaaaccattactttcagcctctttttgaaatatcaaaatggatgtcttagcagcagaattcaaatcagtcaaagtatcaccaaga |
33306441 |
T |
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| Q |
628 |
ggacccaatacaggctcgtccaaaacaggatccaacgtttgtgccaatgacatcttccttctatgtcctctcccaataatatacaaatcaaaccctttat |
727 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33306442 |
ggacccaatacaggctcgtccaaaacaggatccaacgtttgtgccaatgacatcttccttctatgtcctctcccaataatatacaaatcaaaccctttat |
33306541 |
T |
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| Q |
728 |
tccccatcttattt |
741 |
Q |
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|||| ||||||||| |
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| T |
33306542 |
tccctatcttattt |
33306555 |
T |
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