View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17217_low_13 (Length: 290)

Name: NF17217_low_13
Description: NF17217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17217_low_13
NF17217_low_13
[»] chr6 (2 HSPs)
chr6 (10-275)||(24254069-24254334)
chr6 (34-66)||(6942804-6942836)
[»] chr7 (5 HSPs)
chr7 (33-275)||(19325620-19325867)
chr7 (107-194)||(12819673-12819760)
chr7 (107-174)||(19645433-19645500)
chr7 (105-152)||(20057832-20057879)
chr7 (137-183)||(22064379-22064425)
[»] chr5 (7 HSPs)
chr5 (107-233)||(29642609-29642735)
chr5 (107-229)||(29820890-29821012)
chr5 (107-188)||(29597298-29597378)
chr5 (107-220)||(29593913-29594027)
chr5 (107-169)||(29647930-29647992)
chr5 (112-220)||(28763595-28763702)
chr5 (38-86)||(29821033-29821081)
[»] chr4 (1 HSPs)
chr4 (102-163)||(53790816-53790877)
[»] chr3 (2 HSPs)
chr3 (107-155)||(25901042-25901090)
chr3 (108-155)||(25915060-25915107)
[»] chr8 (1 HSPs)
chr8 (107-174)||(27618720-27618787)
[»] chr1 (1 HSPs)
chr1 (107-173)||(15961475-15961541)
[»] chr2 (1 HSPs)
chr2 (112-152)||(21021047-21021087)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 24254334 - 24254069
Alignment:
Q  10 taatactggtttctcgatatcagaaagcaattctctatcatttgaaagataatagagtagagcaggctagtggtaataaaataccatggaaattcgtcaa 109  Q
    |||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  24254334 taatactgatttctcaatatcacaaagcaattctctatcatttgaaagataatagagtagagcaggctagtggtaatgaaataccatggaaattcttcaa 24254235  T
Q  110 ggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatgcgtgttgttttgaaa 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24254234 ggattacgttgaaagtttggcttcaatttgttgaaaataagtttctttatgatgatttacttgttctaatttgtttggattcatgcgtgttgttttgaaa 24254135  T
Q  210 tctttgtcattccatagtaatagaatagattgcaagtatattttgctgttgacttattatattgtt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24254134 tctttgtcattccatagtaatagaatagattgcaagtatattttgttgttgacttattatattgtt 24254069  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 6942836 - 6942804
Alignment:
Q  34 aagcaattctctatcatttgaaagataatagag 66  Q
    |||||||||||||| ||||||||||||||||||    
T  6942836 aagcaattctctataatttgaaagataatagag 6942804  T

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Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 33 - 275
Target Start/End: Complemental strand, 19325867 - 19325620
Alignment:
Q  33 aaagcaattctctatcatttgaaagataatagagtagagcaggctagtggtaataaaataccatggaaattcgtcaaggattacgttgaaagtttggctt 132  Q
    |||||||| || ||||||||||||||||||||||||||||  |||||| ||||| ||||| ||||||  |||| ||||||||| ||||||||||||||||    
T  19325867 aaagcaatactatatcatttgaaagataatagagtagagctagctagtagtaatgaaataacatggagtttcgccaaggattatgttgaaagtttggctt 19325768  T
Q  133 caatttgttgaaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatgcgtgttgttttgaaatctttgtcattcc----atagta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||    ||||||    
T  19325767 caatttgttgaaagtaagtttctttatgatgatttacttgttccaatttgtttgaattcatgcgggttgttttgaaatccttgtcattccatatatagta 19325668  T
Q  229 atagaatagattgcaagtatattttgctg-ttgacttattatattgtt 275  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||||    
T  19325667 atagaatagattgcaattatattttgatgtttgacttattatattgtt 19325620  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 12819760 - 12819673
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatg 194  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||||||  ||| |||||||||||||  ||||| ||||||||||||    
T  12819760 caaggattatgttgaaagtttggcttcaatttgttgaaactgagtttctacatgttgatttacttgtttgaatttatttgaattcatg 12819673  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 19645500 - 19645433
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttacttgtt 174  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  19645500 caaggattatgttgaaagtttggtttcaacttgttgaaagtaagtttctttattatgatttacttgtt 19645433  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 20057879 - 20057832
Alignment:
Q  105 gtcaaggattacgttgaaagtttggcttcaatttgttgaaagtaagtt 152  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||||||    
T  20057879 gtcaaggattatgttgaaagcttggcttcaacttgttgatagtaagtt 20057832  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 22064379 - 22064425
Alignment:
Q  137 ttgttgaaagtaagtttctttatgatgatttacttgttctaatttgt 183  Q
    |||||||||||||||||||||| || ||||||||||||  |||||||    
T  22064379 ttgttgaaagtaagtttctttacgacgatttacttgtttgaatttgt 22064425  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 29642609 - 29642735
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatgcgtgttgttttg 206  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||||||||  |||| |||||    
T  29642609 caaggattatgttgaaagtttggcttggatttgttgaaagtaagtttctttacaatgatttacttgttcaaatttatttgaattcatgtatgttattttg 29642708  T
Q  207 aaatctttgtcattccatagtaataga 233  Q
    ||||| || | ||| ||||||||||||    
T  29642709 aaatccttataatttcatagtaataga 29642735  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 107 - 229
Target Start/End: Complemental strand, 29821012 - 29820890
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatgcgtgttgttttg 206  Q
    ||||||||| ||||||||||| ||||  ||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||||||||  |||| |||||    
T  29821012 caaggattatgttgaaagtttagcttggatttgttgaaagtaagtttctttacaatgatttacttgttcgaatttatttgaattcatgtatgttattttg 29820913  T
Q  207 aaatctttgtcattccatagtaa 229  Q
    |||||| | ||||| ||||||||    
T  29820912 aaatctatatcatttcatagtaa 29820890  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 29597378 - 29597298
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttacttgttctaatttgtttgaa 188  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||| ||||| ||||||    
T  29597378 caaggattatgttgaaagtttggcttcgatttgttgaaagtaag-ttctttagaatgatttacttgttcgaatttatttgaa 29597298  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 29594027 - 29593913
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgat-gatttacttgttctaatttgtttgaattcatgcgtgttgtttt 205  Q
    |||||||||  |||||||||||||||| |||| |||||||||||||||||||  || ||||||| ||||| ||||| ||  ||||||||| |||| ||||    
T  29594027 caaggattattttgaaagtttggcttcgatttcttgaaagtaagtttctttacaatggatttacctgttcaaatttattcaaattcatgcatgttatttt 29593928  T
Q  206 gaaatctttgtcatt 220  Q
    | ||||  |||||||    
T  29593927 ggaatccatgtcatt 29593913  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 29647930 - 29647992
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttac 169  Q
    ||||||||  ||||||| ||||||||  ||||||||||||||||||||||||  |||||||||    
T  29647930 caaggattgtgttgaaaatttggcttggatttgttgaaagtaagtttctttacaatgatttac 29647992  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 28763702 - 28763595
Alignment:
Q  112 attacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatgcgtgttgttttgaaatc 211  Q
    |||| ||||||||||||| | ||||||| ||| | |  ||| |||| | ||||||||||||||  ||||| ||||||||  ||| | |||||||||||||    
T  28763702 attatgttgaaagtttggttccaatttgctgacaatt-gttcctttcttatgatttacttgtttgaatttatttgaattgttgcattttgttttgaaatc 28763604  T
Q  212 tttgtcatt 220  Q
     ||||||||    
T  28763603 cttgtcatt 28763595  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 29821081 - 29821033
Alignment:
Q  38 aattctctatcatttgaaagataatagagtagagcaggctagtggtaat 86  Q
    |||||||||| |||||||| ||||||||||| |||| |||| |||||||    
T  29821081 aattctctatgatttgaaaaataatagagtaaagcaagctattggtaat 29821033  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 53790816 - 53790877
Alignment:
Q  102 ttcgtcaaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatg 163  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  53790816 ttcgccaaggattatgttgaaagtttggcttcaattcgttgaaaggaagttcctttatgatg 53790877  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 25901090 - 25901042
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttct 155  Q
    ||||||||||||||||||||||| ||||| | ||||||||| |||||||    
T  25901090 caaggattacgttgaaagtttggtttcaactagttgaaagtgagtttct 25901042  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 25915107 - 25915060
Alignment:
Q  108 aaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttct 155  Q
    |||||||||||||||||||||| ||||| | ||||||||| |||||||    
T  25915107 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttct 25915060  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 27618720 - 27618787
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttacttgtt 174  Q
    ||||||||| |||||||| |||| |||||||| ||||||||||||| || | ||| || |||||||||    
T  27618720 caaggattatgttgaaagcttggtttcaatttcttgaaagtaagttcctatttgacgaattacttgtt 27618787  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 15961475 - 15961541
Alignment:
Q  107 caaggattacgttgaaagtttggcttcaatttgttgaaagtaagtttctttatgatgatttacttgt 173  Q
    ||||| |||||||||||| |||| ||||  ||||||||||||||||||| ||  | |||||||||||    
T  15961475 caagggttacgttgaaagcttggtttcatattgttgaaagtaagtttctctacaacgatttacttgt 15961541  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 21021087 - 21021047
Alignment:
Q  112 attacgttgaaagtttggcttcaatttgttgaaagtaagtt 152  Q
    |||| ||||||||||||| ||||| ||||||||||||||||    
T  21021087 attatgttgaaagtttggtttcaacttgttgaaagtaagtt 21021047  T

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